 |
|
EBI DbfetchID BC124252; SV 1; linear; mRNA; STD; VRT; 1299 BP. XX AC BC124252; XX DT 25-SEP-2006 (Rel. 89, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 4) XX DE Danio rerio zgc:153114, mRNA (cDNA clone MGC:153114 IMAGE:7283985), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1299 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1299 RG NIH MGC Project RA ; RT ; RL Submitted (22-SEP-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998E0715288Q. DR ImaGenes; IRAKp961B18284Q. DR ImaGenes; IRBOp991C0885D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Cecilia Moens CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 284 Row: b Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..1299 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_18" FT /clone="MGC:153114 IMAGE:7283985" FT /tissue_type="Embryo, *AB wild type, 18-20 hpf, pooled from FT about 1200 embryos" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1299 FT /gene="zgc:153114" FT CDS 313..1098 FT /codon_start=1 FT /gene="zgc:153114" FT /product="zgc:153114" FT /db_xref="GOA:Q08CG2" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q08CG2" FT /db_xref="ZFIN:ZDB-GENE-030131-595" FT /protein_id="AAI24253.1" FT /translation="MRRRQKRLLRVGLLLSAALLLLLLGSVSLERRLDAEEPEGGAGLA FT QMQKVNRKQVLKDGVRKKDWHDYAAIRSDAARTGAGEQGRPYPLTDAERVDQAYRENGF FT NIFVSDRIALNRSLPDIRHPNCKLKLYTADLPNTSVIIPFHNEGWSSLLRTVHSVLDRS FT PPSLIAEIILVDDFSDKGHLKAPLEQYMVRLPKVRILRTQKREGLIRTRLLGAAAARGQ FT VITFLDSHCEANVNWLPPLLDRIAQNTNSSVLDSFNQRT" XX SQ Sequence 1299 BP; 275 A; 362 C; 403 G; 259 T; 0 other; aaaacagctg agagagcatc ttctgcactc ctggatgagc tgctccgccc cggggaccgt 60 cgcgcacaca tccgcacaca ccagcccggt ttacggctga tcctcagctt atacgttaaa 120 tctgttgtag aatatggcca aagtaaggct tccggagaag gaacagagca ttcggtgttt 180 ttaaagtaag acgcagcgag gttaaccctt agcggactcc cccgtcagga agctgcagtg 240 gttcggtcct gagcgcggaa gcgagctgaa gtttgcggat ctgtcggagc gtcgcggaga 300 catcgtgagg agatgcggcg caggcagaag cggctgctgc gggtcgggct gctgctctcc 360 gcggcgctgc tgctgctgct gctgggctcc gtcagtctgg agcgccggct ggacgcggag 420 gagccggagg gcggagcggg actcgcgcag atgcagaaag tgaacagaaa gcaagtgctg 480 aaggatggcg tccggaagaa ggactggcat gactatgcag ccatcaggag tgacgcggca 540 cgaacaggtg ctggagagca gggccggccg tacccactga cggatgcaga gcgtgtggat 600 caggcctaca gagagaacgg cttcaacatc ttcgtcagcg accgcatcgc cctcaacaga 660 tcactgcctg acatcagaca ccccaactgt aagttgaagc tgtacactgc agatctcccc 720 aacaccagcg tcatcatccc gttccacaat gagggctggt cgtctctgct gcggacggtg 780 cacagtgtgc tggatcgctc gccgccgtcg ctcatcgcag agatcatcct ggtggacgac 840 ttcagtgata aagggcacct gaaggctccg ctggagcagt atatggtgcg tctcccgaag 900 gtgcggatcc tgcgcactca gaaacgtgag ggtctgatcc gcaccaggct gctgggggcc 960 gccgccgccc gcgggcaggt catcaccttc ctggactcac actgcgaggc caacgtcaac 1020 tggctgccgc cgctgctgga tcgaatcgca cagaacacca acagcagcgt gctggactcc 1080 ttcaaccagc gcacataacg cctgtgtgtc tgcgcctgtg tgtctgcgcc tgtgcgcgcg 1140 cacgcgtgcg tgtgtgtgtg agtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgcgcgtg 1200 cgcgcgctcc tctgctcttc atcacggctg cagtttatct gttatatgaa ctcttcagat 1260 attaaagtcc tgcattattc tgaaaaaaaa aaaaaaaaa 1299 // |
|