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EBI DbfetchID BC123914; SV 1; linear; mRNA; STD; VRT; 3350 BP. XX AC BC123914; XX DT 25-SEP-2006 (Rel. 89, Created) DT 03-DEC-2006 (Rel. 90, Last updated, Version 2) XX DE Xenopus tropicalis hypothetical protein LOC548946, mRNA (cDNA clone DE MGC:145193 IMAGE:7653572), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-3350 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-3350 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-3350 RA Klein S., Gerhard D.S.; RT ; RL Submitted (22-SEP-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998H1816904Q. DR ImaGenes; IRAKp961I08276Q. DR ImaGenes; IRBNp992E0335D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Timothy Grammer (Richard M. Harland Laboratory, CC University of California, Berkeley) CC cDNA Library Preparation: Joint Genome Institute CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 276 Row: i Column: 8 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 3000. XX FH Key Location/Qualifiers FH FT source 1..3350 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="ElectroMAX DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_XGC_tropBrn3" FT /clone="MGC:145193 IMAGE:7653572" FT /tissue_type="Brain, adult" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8364" FT gene 1..3350 FT /gene="LOC548946" FT CDS 68..1477 FT /codon_start=1 FT /gene="LOC548946" FT /product="hypothetical protein LOC548946" FT /db_xref="GOA:Q08D71" FT /db_xref="InterPro:IPR007006" FT /db_xref="InterPro:IPR016900" FT /db_xref="UniProtKB/TrEMBL:Q08D71" FT /protein_id="AAI23915.1" FT /translation="MDKLEGYYFSALFSGCFLLSSILFSKITRQQRDPYMDESFHIPQA FT QLYCQGHFNQWDPMITTLPGLYLASVGMVKPAAWLFGWSDSVACSSGMLRFINLLFSLG FT NLYMIYLILSKINCKNKVSSFKKILSTLTLYAFPTLYFFTFLYYTDTGSTFFVLFAYLM FT CLYGNHKSASLLGLCAFFFRQTNIIWIIFCAGNVISEKLTEAWKTHLKKRDENPSAKGS FT VSEAVKALVFLFQYCLSVRNIIMLVQLTWPYITLVLGFFVFLSFNGGIVVGDKTSHEAC FT LNFPQLFYFLGFTLIFSFSHLFSPQKLKEFIKSVWKQPLIYMALAGISVILIWKFTYVH FT KYLLADNRHYTFYVWRKIFQRHELVKHLLVPGYLFAAWSFADSLKGKSIFWLLMFYSCL FT LAAMVPQKLLEFRYFIVPYIIFRLNIPIPSVPKILLELALYVTINVFSFYLFLHKTFQW FT PDNEQVQRFMW" XX SQ Sequence 3350 BP; 964 A; 612 C; 628 G; 1146 T; 0 other; agcagcgata cccgtaggtt tgccatatgc tcggagagtc aggctctaca cttctcagac 60 atacagtatg gacaagcttg aaggttacta cttctctgcc ctgttcagtg gctgctttct 120 gctctctagt atacttttct ccaaaatcac aaggcaacag agggatcctt atatggatga 180 gagctttcac atcccccaag cacagcttta ttgccaaggc cactttaacc agtgggatcc 240 aatgatcaca acccttcctg gcttatatct agcttctgtt ggcatggtca aaccagctgc 300 ttggctgttt ggatggagtg atagtgtagc ttgctcctct gggatgctgc ggtttattaa 360 ccttcttttc agcttaggca atttatacat gatctattta attctttcca agataaactg 420 caaaaacaag gtttcaagct tcaaaaaaat tttgtccact ctgactttat atgcatttcc 480 aactctctat tttttcactt ttctttacta cacagacact ggatctactt tttttgttct 540 ctttgcatac ttaatgtgcc tgtatgggaa ccataaaagt gcaagtcttc ttggtctgtg 600 tgctttcttt ttccgtcaga caaacatcat atggattatt ttctgtgctg gaaatgtcat 660 ttcagaaaaa ctaacagaag catggaaaac tcacctcaag aaacgagatg aaaatccttc 720 agccaaggga tcagtttcag aagcagtgaa agctttagtg tttctttttc agtactgctt 780 gtctgtgagg aatataatta tgcttgttca attaacatgg ccatatatca ctttggttct 840 tgggtttttt gtttttctgt catttaatgg tggaatagtt gttggagata aaacaagtca 900 tgaggcctgc ttgaacttcc cacaactttt ctatttcctt ggttttacac tgattttttc 960 attttctcat ctattttccc cccaaaagct aaaggaattc attaaatctg tttggaagca 1020 acctcttatt tatatggcat tagcgggcat ctcagttatt ttaatttgga aattcaccta 1080 tgtccataaa tatttgctag cagataaccg tcactacacg ttttatgtat ggagaaaaat 1140 cttccagcga catgaactag taaaacactt gttagttcca ggctatctct ttgctgcatg 1200 gagttttgca gacagtctga agggcaagtc cattttctgg ttgctaatgt tttactcctg 1260 tttgctggct gccatggtcc ctcagaaatt gctagaattt cgttatttta ttgtgccata 1320 catcatcttt agactaaaca tacccatccc ttcagtacct aagattctct tagagctagc 1380 actatacgtg accataaacg tattctcttt ttacttattt ttacataaaa ctttccaatg 1440 gccggataat gaacaagttc agagatttat gtggtaaaac aatgaactat tcctacaaca 1500 cagttgtatt gaaagttatg aaatgctggc aatagaagcc tccagctgtg tatatacata 1560 atgcagttgt taagtaggta atacatactg ctgttcactt accttttcta ttcatgttca 1620 tttagagcaa atttaaacct ttaaaataaa ttcatgtaaa agcacttttg caactcacag 1680 aatttttatt ttgtgtttga gtattccaag atatgaagaa aaatgcataa atctaatcta 1740 atgaattttg taacaacaac cccagtctgt gatactttca gggtgaaaaa agaggactgt 1800 tcttgtgttg ctgtctttag aaaagacatc agaaaaatct aagattttta tgtccagtag 1860 cgggtccaca ttgggtctat ttaggagttt gcctggccaa gagggggcat gacttaggtg 1920 tgactggggc agggacagag ctggggcatg tctggggtag aagtgccaaa ggccccacca 1980 gagattaatc tgaccatgaa ggtaatatca gaatagttgt tttttttttt tttggcccat 2040 tcacaaaaaa tgggcgagca ggtcgaagta tagcaggata tatttttctt catgtcttgg 2100 aatcttaaat taatgtacac ttttacattt ttaacattta ttttacattc atttaagttt 2160 acatttattt cttttaaagg ctcactttat tttaaaccta tggggtatag gttatattct 2220 atattttata tagaaagcct gcattatgta tttatataaa tgggagctgc tatcatctcc 2280 atagaaagta ccgatatggg acccattttc cagaatgctc aggacctggg gttttctgca 2340 gagatcttta cataatttgg atctctatac cttaagtcta ttaaaagatt atttaaacat 2400 taaatgaacc caaaaggatt gttttgcttc caataaggat taattgtatc ttagctggga 2460 taaagtacaa ggtactgttt tattattaca gagaaaaagg aaatcatttt tagaaattag 2520 aattatttgc ttataatgga gtctatgaga gacggtcttc ctgtaattcg gaactttttg 2580 gataccgggt tacgtataac gtatcccata cctgtacaac tcatgatttg ctgctttgtt 2640 tttttcagca gctcaggaga aacagcagaa ctttgcattt tagagggaag gaagcacagc 2700 acaatcacta ccttatgggc atggttcctt gcttctctgt tatggtacca tgttgccagt 2760 aaccggcttt gctattaggg ccctgcccaa gacctttgct aggttcttct ggtattgctt 2820 ggtaattaca agtgatgact atgccttgtg ctcatttcag ctgtggcatg aataatagaa 2880 gatgccgccg atgccctgaa aatactgtgt tgatgaacaa gttagatggt atactgtttt 2940 tctttaaagg acatgtaaac tctttcactg ggggggctgc ctaacatttt ggcaaaaaac 3000 ttttccctct acccaacaag aagagcccta tacaagttct tctcaaatcc atgacttgtc 3060 attatgtccc ttttaaggag ttgtttcttt aagtataatg taggtattga tattctgtga 3120 caatttgcaa ttggtcttca tttttttgca ttttttcatg atatccagca accaggcagt 3180 ggtttgaatg atagactgga atatgaattg atgtggtact gagtagaatg ttaagtaaca 3240 aaaaaaaagt aagaataaca ataaaattgt atcctcactg agcaataatt tgactgctgg 3300 ggtgagtgac ccctatttga aagctgaaaa gagtcaaaaa aaaaaaaaaa 3350 // |
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