EBI Dbfetch

ID   BC123822; SV 1; linear; mRNA; STD; MAM; 2519 BP.
XX
AC   BC123822;
XX
DT   23-SEP-2006 (Rel. 89, Created)
DT   24-JAN-2007 (Rel. 90, Last updated, Version 5)
XX
DE   Bos taurus glycosyltransferase, mRNA (cDNA clone MGC:142926 IMAGE:8281439),
DE   complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-2519
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (20-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000000459; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000000583; Bos_taurus.
DR   ImaGenes; IMAGp998I2117944Q.
DR   ImaGenes; IRAKp961G24271Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Lee Alexander, USDA, ARS, NPA
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Taniguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Bala M, Barber S, Babakaiff R, Beland J, Chand S, Chun E,
CC   Del Rio L, Gibson S, Kirkpatrick R, Liu J, Matsuo C, Mayo M,
CC   Palmquist D, Santos RR, Stott J, Tsai M, Wong D, Wynhoven B, Hanson
CC   R, Siddiqui A, Holt R, Jones SJ, Marra MA
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 271 Row: g Column: 24.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2519
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="L1 Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-27"
FT                   /clone="MGC:142926 IMAGE:8281439"
FT                   /tissue_type="Basal ganglia, female calf 8.5 months, L1
FT                   Hereford"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:9913"
FT   gene            1..2519
FT                   /gene="C3orf39"
FT   CDS             292..2034
FT                   /codon_start=1
FT                   /gene="C3orf39"
FT                   /product="glycosyltransferase"
FT                   /db_xref="GOA:Q5NDF2"
FT                   /db_xref="InterPro:IPR008957"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5NDF2"
FT                   /protein_id="AAI23823.1"
FT                   /translation="MHLSAVLNALLVSVLAAVLWKHVRLREHAASLEEELAVGRRAADP
FT                   APALRIDYPKALQILTEGGTHMVCTGRTHTDRLCRFKWLCYSSEAEEFIFFHGNASVML
FT                   PSLGSRRFQPALLDLSTVEDHNTQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDN
FT                   LMHVFHDDLLPLFYTLRQFPGLAREARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKA
FT                   LGRLLCFSHAFVGLSKVTTWYQYGFVQPQGPKANILVSGNEIRQFAHFLMEKLNVSQAG
FT                   GPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHAFADVVRLVSNASM
FT                   LVSMHGAQLVTALFLPRGAAVVELFPYAVNPDHYTPYKTLATLPGMDLQYIAWQNTMPE
FT                   NTVTHPERPWDQGGIAHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLI
FT                   QTIRRVVKGHPGPRKQKWTVSLYPGKVREARCQASVQGASEARLSVSWQIPWNLKYLKV
FT                   REVKYEVWLQEQGENTYVPYMLALQNHTFTENIKPFTTYLVWIRCIFNKTLLGPFADVL
FT                   VCST"
XX
SQ   Sequence 2519 BP; 466 A; 818 C; 765 G; 470 T; 0 other;
     gggcacctgc gaggcgagcg gcggtgacgg accagactac gcggaggagc ctgcgctccc        60
     ttcctgggcc tccacggctc ggagcaggcg gctggggcag cggcgggcac gggttcggcc       120
     aaagccatct ccgcggaggg ccggcctgga agcttcagcc ccgtggagcg cgggctgtag       180
     ggtgcaggcc tctgccggtc ctccgggagc ccgcagggat gggtaaagcc ggccaggctc       240
     aagctgcttc cccggggccg tcgtctctct agggccccag gcggcgctag gatgcacctg       300
     tccgccgtgc tcaacgccct gctggtgtcc gtgctggcag ccgtgctctg gaaacacgtg       360
     cggctgcgtg agcatgcggc ctccctggag gaggagctgg ccgtcggccg ccgggccgcc       420
     gaccccgccc ccgccctgcg gatcgactac ccgaaggcgc tgcagatcct gaccgagggc       480
     ggcacgcaca tggtgtgcac cggccgcacg cacaccgacc gcctctgccg cttcaagtgg       540
     ctctgctact ccagcgaggc ggaggagttc atcttcttcc acggcaacgc ctccgtgatg       600
     ctgcccagcc tgggctcgag gcgcttccag ccggccctgc tcgacctgtc taccgtggag       660
     gaccacaaca cccagtactt caacttcgtg gagctgccgg ccgctgccct gcgcttcatg       720
     cccaagcccg tgtttgtgcc cgacgtggcc ctcatcgcca accgcttcaa tcccgacaac       780
     ctcatgcatg tcttccacga cgacctgctg cctctcttct acacccttcg gcagttcccc       840
     ggcctggccc gcgaggcccg gctcttcttc atggagggct ggggagaggg tgcccacttc       900
     gacctctaca agctgctcag ccccaagcag cccctcctga gggcgcagct gaaggccctg       960
     ggccggctgc tctgcttctc ccatgctttc gtgggcctct ccaaggtcac cacctggtac      1020
     cagtacggct tcgtccagcc ccagggccca aaggccaaca tcctggtctc cggcaatgag      1080
     atccgacagt tcgcgcattt cctgatggaa aagctgaacg tgagccaggc tgggggcccc      1140
     ctgggcgagg agtacatcct ggtgttcagc cgcacccaga acagactcat cctgaatgag      1200
     gcagagctgc tgctggccct ggcccaggag ttccagatga agaccgtgac ggtgtccctg      1260
     gaagaccacg cctttgcaga tgtggtgcgg ctggtcagca acgcctccat gctggtcagc      1320
     atgcatgggg cccagctggt cacggccctg ttcctgcccc gcggggcggc cgtggtggag      1380
     ctcttcccct atgctgtcaa ccctgaccac tacacccctt ataagactct ggccacgctg      1440
     cctggcatgg acctccagta catagcctgg cagaacacga tgccagagaa cacggtcaca      1500
     catcccgaac ggccctggga ccaggggggc atcgcccacc tagaccgggc cgagcaggcc      1560
     cggatcctgc aaagccggga ggtcccccgg cacctctgtt gccggaaccc ggagtggctc      1620
     ttccgaatct accaggacac caaggtagac atcccatcgc tcatccaaac tatacggcgt      1680
     gtggtgaagg gccatccggg gccgaggaag cagaagtgga cggtcagcct gtatcccggc      1740
     aaggtgcggg aggcgcggtg ccaggcgtcg gtgcagggcg cctccgaggc ccgcctctcc      1800
     gtctcctggc agatcccatg gaacctcaag tacctgaagg tgagggaggt gaagtacgag      1860
     gtgtggctcc aggagcaggg ggagaacacc tacgtgcctt acatgctggc cttgcagaac      1920
     cacaccttca cggagaacat caaacccttc actacctatc tggtgtggat ccgctgcatt      1980
     ttcaacaaga cgctgctggg accctttgca gatgtgctgg tgtgtagcac gtagcgagcg      2040
     gcctggccag gcctcctggg gtgggggctc ctctgcctcg gagactctgg gcccaccagc      2100
     cctccagggt ggcttctggg aattatttat ttattgacca gacctgtctc tgggtcatct      2160
     cactgcatct gaggtgtggg gttctcagag cgcctctttg cacaagtgca ctggggcctc      2220
     cccaccctct tctcccatgc tgaacatcca taccctggag aaggccagag gggggaggag      2280
     aaagaggaga gtaaggatcc caaagaacct ctttggctga gtgatcatcc tgttccccac      2340
     gacgtctttc tggttggtat cgggtttgtg gaaactgctg ccaattctgt ggctgcttgg      2400
     gtgggtgtgg atgtacatca gcttccactg tcatgaaact cacctgtagc cccaggaagg      2460
     gtatgtttgg aacactcatt aaatgattat aaataaaaaa aaaaaaaaaa aaaaaaaaa       2519
//