EBI Dbfetch

ID   BC123662; SV 1; linear; mRNA; STD; MAM; 2421 BP.
XX
AC   BC123662;
XX
DT   23-SEP-2006 (Rel. 89, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 5)
XX
DE   Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
DE   N-acetylgalactosaminyltransferase 13 (GalNAc-T13), mRNA (cDNA clone
DE   MGC:143063 IMAGE:8226266), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-2421
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (20-SEP-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000003384; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000004386; Bos_taurus.
DR   ImaGenes; IMAGp998N2417801Q.
DR   ImaGenes; IRAKp961M15270Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Lee Alexander, USDA, ARS, NPA
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 270 Row: m Column: 15.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2421
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="L1 Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-28"
FT                   /clone="MGC:143063 IMAGE:8226266"
FT                   /tissue_type="Cerebral cortex , female calf 8.5 months, L1
FT                   Hereford"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:9913"
FT   gene            1..2421
FT                   /gene="GALNT13"
FT   CDS             496..2166
FT                   /codon_start=1
FT                   /gene="GALNT13"
FT                   /product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
FT                   N-acetylgalactosaminyltransferase 13 (GalNAc-T13)"
FT                   /db_xref="GOA:Q08DM9"
FT                   /db_xref="InterPro:IPR000772"
FT                   /db_xref="UniProtKB/TrEMBL:Q08DM9"
FT                   /protein_id="AAI23663.1"
FT                   /translation="MRRFVYCKVVLATSLMWVLVDVFLLLYFSECNKCDDKKERSLLPA
FT                   LRAVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRLEG
FT                   CKTRVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERDFLK
FT                   LTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLL
FT                   ARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR
FT                   TLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSH
FT                   VGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRK
FT                   TLRENLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNC
FT                   HGMGGNQVFSYTADKEIRTDDLCLDVSRLNGPVIMLKCHHMRGNQLWEYDAERLTLRHV
FT                   NSNQCLDEPSEEDKMVPTMQDCSGTRSQQWLLRNMTLGA"
XX
SQ   Sequence 2421 BP; 699 A; 484 C; 596 G; 642 T; 0 other;
     gtctcttgcg gctccttggc cttggcgccc gctctcgagg agccctccag cccgccgctg        60
     cgctatgagg gcgcctctcc agggctggcc gaggccggag ccggctcgct cttctcccgg       120
     ggaagtgtga gcagagaggc gcgggcggga agtgggactg cgcgcggcgc tcgcgggccg       180
     gcgcgggttc caggtgagca cgggatcggt gtgccccaca ctcgtcgcag ccggccggca       240
     cctgccgggt tgggtcggag gctaaattcc gtgcgtggac cgccgttccc tcttcgcggg       300
     atccctggcc acgacagcag atgcattttg taggagtatt ctgaggatga atgtttgcaa       360
     atcattctga aattgccaag tgccacatac atgggatgca tcctgctttt atccgggagt       420
     tcacctctgt ggcttggatt tgtcacagcc gtgtctgtct ttgatctctg tgttaactag       480
     aaatcaaggg aagatatgag gaggtttgtt tactgcaagg tggttctagc cacttcactg       540
     atgtgggttc tcgttgatgt cttcttactc ctgtacttca gtgaatgtaa caaatgtgat       600
     gacaagaagg agaggtccct gctacctgca ctcagggctg ttatttcaag aaaccaagaa       660
     gggccaggag aaatgggaaa ggctgtgctg attcctaaag atgaccagga gaaaatgaaa       720
     gaattgttta aaatcaatca gtttaacctt atggccagtg atttgattgc ccttaacaga       780
     agtctgccgg atgtaagatt agaaggatgc aagacaaggg tctaccctga tgaactccca       840
     aacacaagtg tagtcattgt atttcataac gaagcttgga gcactctcct cagaactgtt       900
     tacagtgtta taaatcggtc cccacactat ctactctctg aggtcatctt ggtagatgat       960
     gccagtgaaa gagattttct caagttaaca ttagagaatt atgtgaaaaa tttagaagtg      1020
     ccagtaaaaa ttattagaat ggaagagcgc tctgggttaa tacgagcccg ccttcgagga      1080
     gcagctgctt caaaaggaca agtcataact ttcctggatg cacactgcga atgcacatta      1140
     ggatggctgg agcccttgct ggcaagaata aaggaggaca ggaagacagt tgtatgcccc      1200
     atcattgatg tgattagtga tgacaccttt gaatacatgg ctgggtcaga catgacttat      1260
     gggggtttta actggaaact gaatttccgt tggtatcctg ttccccagag agaaatggat      1320
     agaaggaaag gagacagaac tttacctgtc aggaccccaa ctatggctgg tggcctattt      1380
     tctattgaca gaaactactt tgaagagata ggaacttacg atgcaggaat ggatatctgg      1440
     ggtggagaga atcttgaaat gtcttttagg atttggcagt gtggaggctc attggagatt      1500
     gtgacttgtt cccacgttgg tcacgttttt cggaaggcaa ctccctacac attccctggt      1560
     ggcactggtc atgtcatcaa caagaacaac aggagactgg cagaagtttg gatggatgaa      1620
     tttaaagatt tcttctatat catatcccca ggtgttgtca aagtggatta cggagatgtg      1680
     tcagtcagaa aaacactaag agaaaatctg aagtgtaagc ccttttcttg gtaccttgaa      1740
     aacatctatc cggactccca gatcccaaga cgttattact cacttggaga gataagaaat      1800
     gttgaaacaa atcaatgttt agacaacatg ggccgcaagg aaaatgaaaa agtgggtata      1860
     ttcaactgtc atggtatggg aggaaatcag gtattttctt atactgctga caaagaaatc      1920
     cgaaccgatg acttgtgctt agatgtttct agactcaatg gacctgtaat catgttaaaa      1980
     tgccaccata tgagaggaaa tcagttatgg gagtatgatg ctgagagact caccttgaga      2040
     catgttaaca gtaatcaatg tctagatgaa ccttctgaag aagacaaaat ggtgcctacc      2100
     atgcaggact gtagtggaac cagatctcaa caatggctgc taaggaacat gactctgggg      2160
     gcctgaagac catctcccct aagccatcaa agtgtctaca cttatgtttt tccattattt      2220
     caattaggga aaaatattaa ctttgttgaa ttgaaagttt taaaatcctt ttagtattct      2280
     aaaacagttg tttataattc atttttagga atgtttgctt acttccctac taaaatttgt      2340
     atctgattaa aaagcacata aaaagaataa ataacagcaa actgttatta aacatcaaaa      2400
     aaaaaaaaaa aaaaaaaaaa a                                                2421
//