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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC122781; SV 1; linear; mRNA; STD; MAM; 1303 BP.
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AC   BC122781;
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DT   03-SEP-2006 (Rel. 89, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 5)
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DE   Bos taurus aminocarboxymuconate semialdehyde decarboxylase, mRNA (cDNA
DE   clone MGC:151926 IMAGE:8031553), complete cds.
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KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1303
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (31-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000008039; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000027649; Bos_taurus.
DR   ImaGenes; IMAGp998I2317244Q.
DR   ImaGenes; IRAKp961D17281Q.
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CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Y. Meng, M. Taniguchi, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 281 Row: d Column: 17.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1303
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-04"
FT                   /clone="MGC:151926 IMAGE:8031553"
FT                   /tissue_type="Liver, 6 month old female calf, Crossbred x
FT                   Angus"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1303
FT                   /gene="ACMSD"
FT   CDS             134..1144
FT                   /codon_start=1
FT                   /gene="ACMSD"
FT                   /product="aminocarboxymuconate semialdehyde decarboxylase"
FT                   /db_xref="GOA:Q0II68"
FT                   /db_xref="InterPro:IPR006992"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q0II68"
FT                   /protein_id="AAI22782.1"
FT                   /translation="MKIDIHTHILPREWPDLKKRFGYGGWVQLQHNGKGEAKMLKDGKV
FT                   FRVVQENCWDPEARLREMDQTGVTVQALSTVPVMFSYWAKPQDTLDLCQLLNNDLAATI
FT                   ASHPRRFVGLGTLPMQAPELAVKEMERCVRKLGFPGVQIGSHINEWDLNARELFPVYAE
FT                   AERLNCSLFVHPWDMQMDGRMAKYWFPWLIGMPAETTAAICSMIMGGVFEKFPKLKVCF
FT                   AHGGGSFPFTVGRISHGFSMRPDLCAQDNPTNPKKYLGSFYTDSLVHDPLALKLLTDVI
FT                   GKDKVILGTDYPFPLGELEPGKLIESMGEFDAETKDKLKAGNALEFLGLERKQFE"
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SQ   Sequence 1303 BP; 379 A; 289 C; 308 G; 327 T; 0 other;
     agttaagcag gcataccgag cggtgtggca gctgtaaaga gactaagtaa atcaattaac        60
     tccatggttt tcatgaagac ctcttcatat caaaacttct ttctttatat gcatctcctc       120
     tgatcctgtg gcaatgaaga ttgacatcca cactcatatt ttaccaagag aatggccaga       180
     cctaaaaaag agattcggtt atggaggctg ggtgcagctc caacacaatg gcaagggaga       240
     agcaaagatg ctgaaagatg ggaaggtctt cagagtggtc caagagaact gctgggatcc       300
     agaagctcgt cttagagaaa tggaccaaac aggagtgact gtgcaagccc tttccacggt       360
     tcctgtcatg tttagctact gggccaaacc tcaggacact ttagacctgt gccagcttct       420
     gaacaacgac ctagccgcca ccattgcgag ccaccccagg aggtttgtgg gtctggggac       480
     gttgcccatg caggcccctg agctggcggt taaggagatg gagcgctgtg tgaggaagtt       540
     gggctttccc ggggttcaga tcggctccca catcaacgag tgggacctga acgcacggga       600
     actcttccca gtgtacgcgg aggctgaaag gctgaactgt tccctatttg tgcacccctg       660
     ggacatgcag atggatggac ggatggccaa atactggttc ccttggctca taggaatgcc       720
     agctgagacc actgcagcca tctgttccat gatcatgggt ggagtgtttg agaagtttcc       780
     taaactgaaa gtgtgctttg cacatggagg tggttccttc cccttcacag ttggaagaat       840
     ctcccatgga ttcagcatgc gtcctgatct gtgtgcacag gacaatccaa ccaacccaaa       900
     gaaatacctt ggttcctttt atacagactc cttggttcat gatcctctgg ccctcaaact       960
     gttaacagat gtcataggaa aggataaagt cattttggga actgattacc ccttcccact      1020
     aggtgagttg gaacctggga aactgataga atcaatggga gaatttgatg cagaaaccaa      1080
     ggataaactc aaagctggca atgccctaga atttttgggg cttgaaagga aacaatttga      1140
     atgactgaat ttgctacaaa ggcaaatttc aagaagacat tttacttttg cttttaaata      1200
     cgtatcacat atgcattatt gaaatcctat tttgaactct tttatccaga aatagaatat      1260
     atccaaatac cctaaaccat tcataacaaa aaaaaaaaaa aaa                        1303
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