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EBI DbfetchID BC122597; SV 1; linear; mRNA; STD; MAM; 2306 BP. XX AC BC122597; XX DT 03-SEP-2006 (Rel. 89, Created) DT 12-JUN-2008 (Rel. 96, Last updated, Version 5) XX DE Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide DE N-acetylgalactosaminyltransferase-like 4, mRNA (cDNA clone MGC:139629 DE IMAGE:8280472), complete cds. XX KW MGC. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RC NIH-MGC Project RP 1-2306 RA Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y., RA Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C., RA Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J., RA Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J., RA Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A., RA Holt R., Jones S.J., Marra M.A.; RT ; RL Submitted (31-AUG-2006) to the EMBL/GenBank/DDBJ databases. RL BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100, RL 570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada XX DR Ensembl-Gn; ENSBTAG00000001485; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000002914; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000006386; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000008092; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000009340; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000013591; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000013959; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000015731; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000016732; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000018408; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000001944; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000003784; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000008381; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000010645; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000012297; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000018074; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000020880; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000022242; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000024494; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000029708; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000031642; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000054027; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000054657; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000056582; Bos_taurus. DR ImaGenes; IMAGp998A1417942Q. DR ImaGenes; IRAKp961P07268Q. XX CC Contact: Robert Kirkpatrick CC Canada's Michael Smith Genome Sciences Centre CC BC Cancer Agency CC Suite 100, 570 West 7th Avenue, Vancouver, British Columbia, CC Canada, V5Z 4S6 CC Tel: 1-604-707-5900 x5406 CC Fax: 1-604-876-3561 CC Email: robertk@bcgsc.ca CC Tissue Procurement: Lee Alexander, USDA, ARS, NPA CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Bovine Genome Sequencing Program, Genome CC Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y, CC Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L, CC Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H, CC Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W, CC Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R, CC Jones S, Marra M CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 268 Row: p Column: 7. XX FH Key Location/Qualifiers FH FT source 1..2306 FT /organism="Bos taurus" FT /lab_host="DH10B" FT /strain="L1 Hereford" FT /mol_type="mRNA" FT /clone_lib="GC_BGC-26" FT /clone="MGC:139629 IMAGE:8280472" FT /tissue_type="Thalamus, female calf 8.5 months, L1 FT Hereford" FT /note="Vector: pExpress1" FT /db_xref="taxon:9913" FT gene 1..2306 FT /gene="GALNTL4" FT CDS 189..2012 FT /codon_start=1 FT /gene="GALNTL4" FT /product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide FT N-acetylgalactosaminyltransferase-like 4" FT /db_xref="GOA:Q0IIK7" FT /db_xref="InterPro:IPR000772" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR008997" FT /db_xref="UniProtKB/TrEMBL:Q0IIK7" FT /protein_id="AAI22598.1" FT /translation="MVCTRKTKTLVSTCVILSGMTNIICLLYVGWVTNYIASVYVRGQE FT PAPDKKLEEDKGDTLKIIERLDHLENVIKQHIQEAPAKPEEAEAEPFTDSSLFAHWGQE FT LSPEGRRVALKQFQYYGYNAYLSDRLPLDRPLPDLRPSGCRNLSFPDGLPEVSIVFIFV FT NEALSVLLRSIHSAIERTPPHLLKEIILVDDNSSNEELKEKLTEYVDKVNGQKPGFIKV FT VRHSKQEGLIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRIISPSFD FT NIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLENSTAPIRSPALIGCFIVDRQY FT FQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTEDLTAHVR FT RNALRVAEVWMDEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTFRWYLVSVY FT PEMRMYSDIIAYGVLQNSLKSDLCLDQGPETENVPIVYICHGMTPQNVYYTSSQQIHVG FT ILSPTVDDDDNRCLVDVNSRPRLIECSYARAKRMKLHWQFSQGGPIQNRKSKRCLELQE FT NSEAEFGFQLVLQRCSGQHWSITNVLRSLTS" XX SQ Sequence 2306 BP; 547 A; 652 C; 682 G; 425 T; 0 other; gcggcgggag ctccaaactt gggcacagcg gctccactgc cagcggtccg ggctttggag 60 accgtcggga ctcaggtgct ccggcgcccg gctgccgcgg gcgtccgagg gggtgtgatc 120 gcgggggagt cccgggtgcg cagagacaag gggcccccgg gagctctata tggaggagag 180 agcccagaat ggtgtgcacc aggaagacca aaactttggt gtccacttgc gtgatcctga 240 gcggcatgac caacatcata tgtctgctct acgtgggctg ggtcaccaac tacatcgcca 300 gcgtgtatgt gcgggggcag gagccggcgc ccgacaagaa gctggaggaa gacaaagggg 360 acaccctgaa gattattgaa cggctggatc acctggagaa tgtcataaag cagcatatcc 420 aagaagcccc cgccaaacct gaggaggcag aggctgagcc cttcacagat tcctctctgt 480 ttgcacactg gggccaggag ctcagccccg aaggccggcg tgtggccctg aagcagttcc 540 agtactacgg ctacaacgcc tacctcagtg accgcctacc cctcgaccgg cccctgcctg 600 acctcagacc cagtgggtgc cgcaacctct cgttccccga cggcctccca gaggtgagca 660 tcgtgttcat ctttgtcaat gaagcactct ccgtgctgct gcgctccatc cactcggcca 720 tcgagcgcac acctccacac ctgctcaagg agatcatcct ggtggatgac aacagcagta 780 acgaggagct gaaggagaag ctgacagagt acgtggacaa ggtgaacggc cagaagccag 840 gcttcatcaa ggtcgtgcgg cacagcaagc aggaaggcct catccgctcc agggtcagcg 900 gctggagggc cgccactgcc cctgtagtgg ctctctttga tgcccacgtg gagttcaatg 960 tgggctgggc tgaacccgta ctcacccgca ttaaggagaa ccggaaacgg atcatctccc 1020 catcctttga caacatcaaa tacgacaact ttgagataga agagtacccg ctggcggccc 1080 aaggctttga ctgggagctg tggtgccgct acctcaaccc ccccaaggcc tggtggaagc 1140 tggagaactc caccgccccg atcaggagcc ctgccctcat cggctgcttc atcgtggacc 1200 gccagtactt ccaggagatc ggcctgctgg atgaaggcat ggaggtctac ggaggcgaaa 1260 atgtcgagct cgggatcagg gtatggcagt gtggtgggag cgtggaggtc ctgccctgct 1320 cacggattgc ccacatcgag cgagcccaca agccctacac cgaggacctc acggcccatg 1380 tccgcaggaa cgccctcagg gtggctgaag tctggatgga cgaatttaaa agccatgtgt 1440 acatggcatg gaacataccc caagaggact caggaatcga catcggggac atcactgcaa 1500 ggaaggctct gaggaaacag ctgcagtgca agaccttccg gtggtacctg gtcagcgtgt 1560 acccagaaat gaggatgtac tcagacatca ttgcctacgg ggtgttgcag aactccctga 1620 agagtgattt gtgtcttgat cagggtccag agacagaaaa tgttcctatt gtgtacatct 1680 gccacgggat gacaccccag aatgtgtact acacgagcag ccagcagatc cacgtgggca 1740 tcctgagccc cacggtggac gacgacgaca accggtgcct ggtggacgtc aacagccggc 1800 cgcggctcat cgagtgcagc tacgccagag ccaagaggat gaagctccac tggcagttct 1860 ctcagggagg ccccatccag aaccgcaagt ccaagcgctg tctggagctg caggagaaca 1920 gcgaagcgga gttcggcttc cagctggtgc tgcagaggtg ctcgggccag cactggagca 1980 tcaccaacgt cctgaggagc ctgacgtcct gaccccgcct gagctgcccc cacgccccgc 2040 ccctttgcta ctgtgtagca cccgctgcaa cgctgcctgc tgtccgtgtg ggggtgtttg 2100 gagtctgggg aaccaggttg gtgggccccc aaaagagctt tgtatttcct attcagtttt 2160 catggagttt atagaaagac gctgaatggt gggtgagggt ataatatcat aaactatttt 2220 gcaactgtaa ataggggaca tgtggaaaat atttataact gacaataaaa taccattgat 2280 taaaaaaaaa aaaaaaaaaa aaaaaa 2306 // |
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