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EBI DbfetchID BC121417; SV 1; linear; mRNA; STD; VRT; 2626 BP. XX AC BC121417; XX DT 08-AUG-2006 (Rel. 88, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Xenopus tropicalis Probable threonyl-tRNA synthetase 2, cytoplasmic, mRNA DE (cDNA clone MGC:146285 IMAGE:7690464), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-2626 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2626 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2626 RA Klein S., Gerhard D.S.; RT ; RL Submitted (02-AUG-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998I2216820Q. DR ImaGenes; IRAKp961K09274Q. DR ImaGenes; IRBNp992D0332D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Timothy Grammer (Richard M. Harland Laboratory, CC University of California, Berkeley) CC cDNA Library Preparation: Joint Genome Institute CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 274 Row: k Column: 9 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: CC 111307890. XX FH Key Location/Qualifiers FH FT source 1..2626 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="ElectroMAX DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_XGC_tropTe4" FT /clone="MGC:146285 IMAGE:7690464" FT /tissue_type="Testes, adult male" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8364" FT gene 1..2626 FT /gene="tarsl2" FT CDS 100..2544 FT /codon_start=1 FT /gene="tarsl2" FT /product="tarsl2 protein" FT /db_xref="GOA:Q0V9S0" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002320" FT /db_xref="InterPro:IPR004095" FT /db_xref="InterPro:IPR004154" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR012675" FT /db_xref="InterPro:IPR012676" FT /db_xref="InterPro:IPR012947" FT /db_xref="InterPro:IPR018158" FT /db_xref="InterPro:IPR018163" FT /db_xref="UniProtKB/Swiss-Prot:Q0V9S0" FT /protein_id="AAI21418.1" FT /translation="MAAHIAQRLTVQEQEIRRLNEEIGRLLELGLQGSVEHSPNPVLEQ FT LRAENEKLKYRISHLQRSLREEQERARPGQYGEPGLKDAAPVEEPKQQNNKAKEKGQAT FT KGENSVGGKPSACEGNKKNEKKAGKEVDGHKQEGPCAPGFIKDRLALYETLKNEHDALL FT AARAAHQSKPIKITLADGKQVDGESWKTTPYQVAIGISKGLADNVVIAKVNNELWDLDR FT PLEQDSNVELLKFDSEEAQAVYWHSSAHILGETMENFYGGCLCYGPPIENGFYYDMYLD FT GRGVSSNEFPSLENMCKAIIKEKQPFERLEVSKDLLLEMFKYNKFKCRILNEKVDTPTT FT TVYRCGPLIDLCRGPHVRHTGKIKTLKIYKNSSTYWEGRADMETLQRIYGISFPDSKLM FT KEWEQFQEEAKNRDHRKIGRDQELFFFHDLSPGSCFFLPRGAHIYNTLTDFIKGEYQIR FT NFTEVASPNIYNSKLWEMSGHWQHYSENMFSFEVEKETFALKPMNCPGHCLMFGHRPRS FT WRELPLRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTMDQIQEEMNGCLQFLQS FT VYKVFGFTFQLHLSTRPENYLGEIEIWNEAEKQLESSLNQFGEPWKLNPGDGAFYGPKI FT DIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKKRPVIIHRAILGSVERMIAI FT LCENYGGKWPFWLSPRQVMVIPVGPSCDEYAQQVCKDVFEAGFMAEVDLDHSCTLNKKI FT RNAQLAQCNFILVVGEKEKTDSAVNVRTRDNKVHGEILLTSAIEKLKTLKKLRSKNAEE FT EF" XX SQ Sequence 2626 BP; 837 A; 499 C; 679 G; 611 T; 0 other; gagaagccgc gataaagagc agtacatcgc aggagccgca gagacacaga gcctgcctca 60 cagctgtcac attgcgtcag cgcgtacacc agctgagcta tggctgccca cattgcacaa 120 cgcctgaccg tgcaagagca ggagatccgc cggctgaatg aggagatcgg acgcctgttg 180 gagctggggc tgcagggcag cgtggagcat agtcccaacc ccgtactgga acagctccgg 240 gcagagaacg agaagctcaa ataccgcatc tcgcacctac agcggagcct gagggaggag 300 caggagaggg ctaggcccgg gcagtacggg gagccgggac tgaaggacgc ggcgccggta 360 gaggaaccaa agcagcagaa caataaagcg aaagagaagg gtcaggccac taaaggggag 420 aattcggtgg gaggaaaacc gtctgcttgt gaaggaaata aaaaaaatga gaagaaagct 480 ggaaaagaag ttgatgggca taagcaagag ggtccttgtg ctccagggtt tatcaaggac 540 aggctagcac tctatgaaac cttgaaaaac gaacacgatg ctttgcttgc tgctcgggct 600 gcacatcaga gtaaacctat taagatcaca ttagccgatg ggaagcaggt tgatggagaa 660 tcttggaaaa caacaccata tcaagtggct attgggatca gtaaaggact ggctgacaat 720 gttgtcattg ccaaagtgaa caatgagcta tgggacctgg atcgtccgtt ggagcaagat 780 tccaatgtgg aactgctcaa atttgatagt gaagaagcac aagctgttta ctggcattca 840 agtgctcaca tccttggaga gacaatggag aatttttacg gaggctgcct gtgttatggc 900 ccacccattg aaaatggatt ctattatgac atgtacttag atggaagagg ggtgtccagt 960 aatgaattcc cttctttgga gaacatgtgt aaagctatta taaaggagaa acagcccttc 1020 gaaaggctgg aagtcagcaa agacctgttg ttagaaatgt ttaagtacaa caaattcaaa 1080 tgtcgaatct taaatgagaa ggttgacaca ccaactacaa cagtatacag gtgtggccca 1140 cttatcgatc tgtgtagagg accacatgtg aggcacacag ggaaaataaa gaccttaaaa 1200 atatacaaga attcttcaac atactgggag gggagggcag atatggagac actgcagagg 1260 atctatggaa tatccttccc tgattcaaag ttgatgaaag aatgggaaca gttccaggaa 1320 gaagctaaaa acagagatca caggaagatc ggaagggatc aagaactttt ttttttccat 1380 gatctaagtc cagggagctg tttttttcta ccacgaggtg cccatattta taacacactg 1440 actgacttca ttaaggggga ataccaaatc cggaatttta cagaagtagc atctcctaat 1500 atttacaata gcaaactgtg ggaaatgtct ggccactggc agcactacag tgagaacatg 1560 ttctcttttg aggttgaaaa ggaaaccttt gctctaaagc ctatgaactg tcctggacat 1620 tgtttaatgt ttggtcatcg gccacggtcc tggagagagt tgcccttacg ctttgcagat 1680 tttggggtcc ttcatcgcaa tgaactttcg ggaacattaa gtggcttgac cagagtcagg 1740 cgctttcagc aggatgatgc tcatatattt tgcactatgg atcagataca ggaggagatg 1800 aatgggtgtc tgcagttcct tcagtctgta tacaaggtgt ttggattcac ctttcagctt 1860 cacctttcaa ccagaccaga gaattacttg ggagaaatag aaatctggaa tgaagcagaa 1920 aagcaacttg aaagtagttt gaatcagttt ggagaaccat ggaagctgaa cccaggagat 1980 ggagcttttt atggtcctaa gattgatata aaaattaaag atgccattgg gcggtaccat 2040 cagtgtgcaa ccattcagct agatttccaa ctgccgattc gttttaactt gacatatgtc 2100 agcaaggatg gggatgacaa gaaaagacct gttatcattc acagagcaat cctgggctct 2160 gtagagagaa tgattgccat cctctgtgaa aactatggag ggaagtggcc attttggctt 2220 tcaccacgtc aggtgatggt tattcctgta ggaccaagct gtgatgagta tgcacaacag 2280 gtatgcaagg atgtctttga agctggtttt atggctgaag tggacctgga tcatagctgt 2340 acactgaata agaaaatccg aaatgcacaa ctggctcagt gcaattttat attagtggtt 2400 ggagaaaaag aaaagacaga cagcgcggtc aatgtgagaa caagagataa caaggtgcat 2460 ggagagattt tgctgacatc agcaatagaa aaactgaaaa cccttaagaa gctgcgcagt 2520 aaaaatgcag aagaggagtt ctgaatattc tgctgattgc tcactattat aagcataaat 2580 ttccaataaa tacattttgg gagattaaaa aaaaaaaaaa aaaaaa 2626 // |
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