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EBI DbfetchID BC120891; SV 1; linear; mRNA; STD; MUS; 3297 BP. XX AC BC120891; XX DT 08-AUG-2006 (Rel. 88, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 3) XX DE Mus musculus exostoses (multiple)-like 1, mRNA (cDNA clone MGC:141419 DE IMAGE:40061414), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-3297 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3297 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000141112. DR Ensembl-Gn; ENSMUSG00000028838; Mus_musculus. DR Ensembl-Tr; ENSMUST00000030643; Mus_musculus. DR ImaGenes; IRAMp995O1421Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Baylor Human Genome Sequencing Center CC cDNA Library Preparation: Baylor Human Genome Sequencing Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAM Plate: 21 Row: o Column: 14. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3297 FT /organism="Mus musculus" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_284" FT /clone="MGC:141419 IMAGE:40061414" FT /tissue_type="PCR rescued clones" FT /note="Vector: pCR-Blunt II-TOPO; Clone identification FT sequence tag: ACATACTC sequenced from the reverse primer" FT /db_xref="taxon:10090" FT gene 1..3297 FT /gene="Extl1" FT CDS 62..2071 FT /codon_start=1 FT /gene="Extl1" FT /product="exostoses (multiple)-like 1" FT /db_xref="GOA:Q0VAW4" FT /db_xref="InterPro:IPR004263" FT /db_xref="InterPro:IPR015338" FT /db_xref="MGI:1888742" FT /db_xref="UniProtKB/TrEMBL:Q0VAW4" FT /protein_id="AAI20892.1" FT /translation="MLWRRKSFWLALSAFWLLLVLLGVFPLRLAVSPGPLPGRSQGWPR FT WLDAAFLQSFSQSETNPEDVAQLPRVSRGSSCTWGACFDTSKCRGKVLKIFVHSPAGPT FT SEAQRRILDSLEGSRYSALSPADACLLLFLPSQDRRGACGPLPPNWNGGRNHLVLSLYP FT APCTRLGQAMVAEASPSSDIFRPGFDIALPYLPEAHPLRGGAPGKLQQHSPQPGATLLA FT VAEEKGRWRITSTHASACLWDRHCEQDPGPQQTYPGETLPNATFCLIPGHRSATSCFLQ FT ALQAGCIPVLLSPRWELPFSEVIDWTKAAIIADERLPLQVLAALREMLPSRVLALRQQT FT QFLWTAYFSSVEKVIHTTLEVIQDRIWGASGHPSLMWNSPPGALLALPTFSTSLQDFPF FT YHLQLGSGPGSSFSAVIWVGASGESLLKLIQEVAGSRHCAQILILWNSEKPPPDRWPET FT AVPLTVIKGHRKVSNRFFPYSNISTNVILSLDAQSTLSTSEVDFAFVVWQSFPERMVGF FT LSGSHFWDEAQGGWGYRTGMTNDFSMVLTTAAFYHRYYHTLFTHSLPKALRTIADETPT FT CVDVLMNFLVATVTKLPPIKVPYGRQHPEAVPMDSGDPRPVPEPQPLDQDCINRLAAGF FT GHMPLVSSQVRLDPVLFKDPVSVQRKKYRSLEKP" FT misc_difference 156 FT /gene="Extl1" FT /note="'C' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'S' in cDNA, 'L' in the mouse genome." FT misc_difference 629 FT /gene="Extl1" FT /note="'A' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'I' in cDNA, 'L' in the mouse genome." FT misc_difference 685 FT /gene="Extl1" FT /note="'A' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 1142 FT /gene="Extl1" FT /note="'G' in cDNA is 'A' in the mouse genome; amino acid FT difference: 'V' in cDNA, 'I' in the mouse genome." FT misc_difference 1410 FT /gene="Extl1" FT /note="'C' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'P' in cDNA, 'L' in the mouse genome." FT misc_difference 1618 FT /gene="Extl1" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 1681 FT /gene="Extl1" FT /note="'C' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'D' in cDNA, 'E' in the mouse genome." FT misc_difference 2136 FT /gene="Extl1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2188 FT /gene="Extl1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2233 FT /gene="Extl1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2330 FT /gene="Extl1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2644 FT /gene="Extl1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2695 FT /gene="Extl1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 2779..2786 FT /gene="Extl1" FT /note="8 bases in cDNA are not found in the mouse genome." FT misc_difference 2950^2951 FT /gene="Extl1" FT /note="2 bases in the mouse genome, GG, are not found in FT cDNA." FT misc_difference 2953 FT /gene="Extl1" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 2960 FT /gene="Extl1" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 3110 FT /gene="Extl1" FT /note="'C' in cDNA is 'G' in the mouse genome." FT misc_difference 3142 FT /gene="Extl1" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 3152..3153 FT /gene="Extl1" FT /note="in the mouse genome : CA." FT misc_difference 3188 FT /gene="Extl1" FT /note="'A' in cDNA is 'C' in the mouse genome." FT misc_difference 3216 FT /gene="Extl1" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 3274..3278 FT /gene="Extl1" FT /note="5 bases in cDNA are not found in the mouse genome." XX SQ Sequence 3297 BP; 653 A; 981 C; 901 G; 762 T; 0 other; gcctcctcca cttgctacag aaattcctca cttccttcta gtcctagctg ttggtggcca 60 catgctgtgg agaagaaagt ccttctggct ggcgttgtca gccttctggc tcctcctcgt 120 cctcctagga gtcttccccc ttcgcctggc agtgtcgccc ggtcctcttc cagggcgctc 180 ccaaggctgg ccccgctggc tggatgctgc cttcttacag agtttctccc agtctgagac 240 gaacccagaa gatgtcgcac agctccctcg ggtctctcgg ggaagcagct gcacctgggg 300 agcctgcttt gacacctcca agtgtagggg aaaggtcctc aagatctttg tgcactcccc 360 ggctggtccg acctctgagg ctcagcgcag gatcctggat tccttggaag gctcccgcta 420 ctctgcactc agcccagcag acgcttgcct tctccttttt ctccccagcc aggatcgtag 480 aggagcctgc gggcccctgc ctccgaactg gaacggaggc cggaaccatc tggtgttgag 540 tctctaccca gccccttgca ccaggctggg acaggcgatg gtagctgagg ccagcccctc 600 ctcggacatc ttccgaccgg gcttcgatat agcgctcccg tatctccccg aagctcaccc 660 attgcgaggt ggggctcccg gcaaactgca gcagcacagt ccccaacctg gggccacctt 720 actggcggta gcagaggaga aaggcaggtg gcgtatcaca agcacccacg cctcagcctg 780 cctctgggac aggcactgtg agcaagaccc tggaccccag cagacctacc caggagagac 840 ccttcccaat gccaccttct gcctcatccc tggtcaccga tctgccacct cctgctttct 900 ccaagccctt caggccggct gcatccccgt gctcctcagc ccccgctggg agctgccttt 960 ctctgaagtc atcgactgga ccaaggcagc catcattgct gatgagagac tcccactgca 1020 ggtcctggct gccctccgtg aaatgctccc ttcgagggtc ctcgccctgc gccagcagac 1080 ccagtttctg tggaccgctt acttctcctc ggtggaaaaa gttatccata ccaccctaga 1140 ggttattcag gaccggatct ggggtgcatc aggtcacccc tcactgatgt ggaatagccc 1200 cccgggagca ctcttggcgc tgcccacatt ttccacgagc cttcaagact tcccctttta 1260 tcatctgcaa ctgggctctg gccctgggag cagtttcagc gccgtgatct gggtgggagc 1320 ctctggagag tccctgctga agctcatcca ggaggtggca ggttctcggc actgtgccca 1380 gatcctgatt ctctggaaca gtgagaagcc gccccctgac aggtggcccg agacagcagt 1440 gcccctaaca gtcatcaagg ggcacaggaa ggtcagcaac cggttcttcc cgtacagcaa 1500 catcagcacc aatgttatcc tcagccttga tgctcagagc actctttcta ccagtgaggt 1560 ggactttgcc tttgtggtgt ggcagagctt tcctgagcgg atggtgggct ttctgtccgg 1620 aagccacttc tgggatgagg cccagggtgg ctggggctac cgtactggga tgaccaatga 1680 cttctccatg gtcctgacca cggctgcctt ctaccacagg tactaccaca ccctcttcac 1740 ccactccctg cctaaggccc tgaggaccat agctgatgag actcccacct gtgttgacgt 1800 cctgatgaac ttcctggtag ccaccgtcac caaactgccc cctatcaagg tgccttatgg 1860 gaggcagcac ccggaggctg tgccaatgga ttctggggat ccacgaccag tgccggagcc 1920 tcagcccctg gatcaggact gcatcaaccg tttagcagca gggttcggcc acatgcctct 1980 ggtttcctct caagtgcgtc tggatccggt gttgttcaag gacccggtat cggtgcaacg 2040 caagaagtat cgcagtctag agaagccata ggcgaggcac tgcacctgtc tgctagacac 2100 gagagaacca acagagatgg atcaaagtcc tgtcctggtt ggccaatcgc tacagggatc 2160 cctgagggcc ggggccttct ccagctgtag tggggttgcg tttggcacgt ttcgcacagg 2220 ccggtgtaca ggttgatcct gttccctgaa atgcctttct ctgcatctct gcctggtcga 2280 cctatgtctg tcagacctgc actcacctcc ttggtgatct cgaagtcctt gcacgattca 2340 cgccgagtgg ccttgagcac atcacgaggc cccagggccg gcctgcaagc tccgtagggc 2400 ggagtcctgc tctcatctct ttggtctggc aggtgcactg taaatatttg agcaatagct 2460 gcaagagtat taactggtgg catgcgtggt ggaacacggg cagaatgtgc acaagacata 2520 acgctgcccc ttactctgga gttcctggtc ccggtacaaa gcacacacca ggatttccag 2580 actcaatcaa gcgtgaacaa agaggccagg agtcgaagat aaccagagga ttcggtgtct 2640 cggtagaccc gggatcttgg gtgactagca gcactgcact accaatcttg accattagag 2700 gtcagctgct gcactactct cccttcaaag gaatggagtt tggttttgct tgacattttg 2760 ttgtttgttt gtttgtttgt ttgtttttgt ttttcaagta agggtttctc tgggtagtcc 2820 tggctgtcct ggaactcgca ctgtatgcca gactagcctc aaattcacag agatccacct 2880 gacttttgct tcccagggtg ctgagattaa attcatgcac tacacctggc tgcctcttga 2940 acttgggggg tcgggaggga aggaggaggc aagacaaggt cccagtctgt aacccaggct 3000 ggcttggaac tcactgcagt cttactgcct cagtttccca agtgttagag ttacaggtgt 3060 gagccacaat gcctgactga atggagttaa agactacgga taaaatgtcc agctagaggg 3120 tcactggtgt gtgcagaccc cgggatgaaa atgtgcaagg aatacgacag aactccacgt 3180 tggcctgaaa acttgggctg ttggcagatg ggctgatcgc caggaagagg gctgtcctca 3240 gcatcctgta ggtgagagtg gagtagggga gggaagggga ggctgctttt cctgggt 3297 // |
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