EBI Dbfetch

ID   BC120318; SV 1; linear; mRNA; STD; MAM; 1494 BP.
XX
AC   BC120318;
XX
DT   08-AUG-2006 (Rel. 88, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 5)
XX
DE   Bos taurus trimethyllysine hydroxylase, epsilon, mRNA (cDNA clone
DE   MGC:142692 IMAGE:8092427), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1494
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (01-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000011648; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000015469; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000053427; Bos_taurus.
DR   ImaGenes; IMAGp998B0917402Q.
DR   ImaGenes; IRAKp961A14270Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Lee Alexander, USDA, ARS, NPA
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 270 Row: a Column: 14.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1494
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="L1 Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-17"
FT                   /clone="MGC:142692 IMAGE:8092427"
FT                   /tissue_type="Ascending colon, 6 month male fetus, L1
FT                   Hereford"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:9913"
FT   gene            1..1494
FT                   /gene="TMLHE"
FT   CDS             113..1378
FT                   /codon_start=1
FT                   /gene="TMLHE"
FT                   /product="trimethyllysine hydroxylase, epsilon"
FT                   /db_xref="GOA:Q0VC74"
FT                   /db_xref="InterPro:IPR003819"
FT                   /db_xref="InterPro:IPR012776"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q0VC74"
FT                   /protein_id="AAI20319.1"
FT                   /translation="MWCHRLSHLQSRLQDLLRGRVTRWALQQSNFKSLFPLAIYWHHTA
FT                   SKSLNCVWQQHEDHFELQYANNVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCI
FT                   QPQTIHLDETTLFFTWPDGHVTRYDLDWLMKNSYEGQKQKVIQPRILWNAEIYQQAQVP
FT                   AVDFQTFLETKEGLKNFLQNFLLYGIAFVENVPPTQKHTEKLAERISLIRETIYGRMWF
FT                   FTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQV
FT                   LQKAPEEFELLSKVPLKHEYIENVGECQNHMIGVGPVLNIYPWNKELYLIRYNNYDRAV
FT                   INTVPYDVVHRWYTAHRTLTRELRRPENEFWVKLKPGKVLFIDNWRVLHGRESFTGYRQ
FT                   LCGCYLTRDDVLNTARLLGLQA"
XX
SQ   Sequence 1494 BP; 437 A; 343 C; 339 G; 375 T; 0 other;
     gccggtttcg gggccaaaag caaaagggcg ggcgcagggc tgccttccga ggctctcctc        60
     gcttgcgatt cgtccacttg gctgaatcgg gagtcgcgac ctctggcaca ggatgtggtg       120
     tcacaggttg tcccacctac aaagcaggct ccaggacctg ctgaggggac gggtcacacg       180
     ttgggccctt caacagtcca acttcaaaag cttatttcca ctagccatct attggcacca       240
     tacagcctcc aagtctctga attgtgtttg gcagcaacat gaagatcatt ttgaactgca       300
     atatgctaac aatgtgatgc gctttgatta tgtctggctt cgagaccact gccgctcagc       360
     atcttgctac aactctaaga ctcaccagcg cagcctagac actgccagcg tggatttatg       420
     tatccagcca cagaccattc atctggatga gaccacactc tttttcactt ggccagatgg       480
     tcatgtgact agatatgatt tggattggct catgaaaaac agctatgaag ggcagaaaca       540
     aaaggtcatc cagcctagaa tcttatggaa tgctgaaatc taccagcaag cccaagttcc       600
     agctgtagat ttccagacgt tcttagaaac caaggaggga ctgaagaact ttctgcagaa       660
     ctttctgctc tatggaattg cttttgtgga aaatgtccct cctactcaga aacacacaga       720
     gaagctggca gaaaggatca gcttgatcag agaaaccatc tatggaagga tgtggttttt       780
     cacttcagac ttctccagag gtgacactgc atacaccaag ctagctctgg atcggcacac       840
     tgacaccacc tattttcaag agccctgtgg cattcaagtg tttcactgtc ttaagcatga       900
     aggaacaggt ggcaggacac tgctagttga tggattctat gcagcagaac aagtacttca       960
     aaaggcacct gaggaatttg aactcctcag taaagtgcca ttgaagcatg aatatattga      1020
     aaatgttgga gaatgtcaaa accacatgat tggggttggg ccagtcttaa atatctaccc      1080
     atggaataaa gagctctatt tgatcaggta caacaactat gaccgggctg tcataaatac      1140
     tgtaccttat gatgttgtcc atcgttggta tacagcacac cggactctaa ccagagagtt      1200
     gaggaggcct gagaatgagt tttgggtcaa actcaagcct ggcaaggtac tatttataga      1260
     caactggcgt gtcctacatg gcagggaatc cttcacaggc taccgccaac tctgtggctg      1320
     ctatttaaca agggatgatg tattaaacac tgctcgtctc ttgggccttc aggcttaaaa      1380
     ttgatggcat tgagattatg aacatacctg acaccctggc tatcagaatt tcatttcata      1440
     tcagcagaat aatattatgt caataccgaa aaaaaaaaaa aaaaaaaaaa aaaa            1494
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