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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC120131; SV 1; linear; mRNA; STD; MAM; 2059 BP.
XX
AC   BC120131;
XX
DT   08-AUG-2006 (Rel. 88, Created)
DT   24-JAN-2007 (Rel. 90, Last updated, Version 5)
XX
DE   Bos taurus 5-aminoimidazole-4-carboxamide ribonucleotide
DE   formyltransferase/IMP cyclohydrolase, mRNA (cDNA clone MGC:140811
DE   IMAGE:8277647), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-2059
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (01-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000019274; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000025662; Bos_taurus.
DR   ImaGenes; IMAGp998K2117934Q.
DR   ImaGenes; IRAKp961P20266Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: S. Lobo, M. Taniguchi, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Taniguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Bala M, Barber S, Babakaiff R, Beland J, Chand S, Chun E,
CC   Del Rio L, Gibson S, Kirkpatrick R, Liu J, Matsuo C, Mayo M,
CC   Palmquist D, Santos RR, Stott J, Tsai M, Wong D, Wynhoven B, Hanson
CC   R, Siddiqui A, Holt R, Jones SJ, Marra MA
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 266 Row: p Column: 20.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2059
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B T1 Phage Resistent cells"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-23"
FT                   /clone="MGC:140811 IMAGE:8277647"
FT                   /tissue_type="Fetal lung, Hereford, 6 month male fetus"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..2059
FT                   /gene="ATIC"
FT   CDS             89..1867
FT                   /codon_start=1
FT                   /gene="ATIC"
FT                   /product="5-aminoimidazole-4-carboxamide ribonucleotide
FT                   formyltransferase/IMP cyclohydrolase"
FT                   /db_xref="GOA:Q0VCK0"
FT                   /db_xref="InterPro:IPR011607"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q0VCK0"
FT                   /protein_id="AAI20132.1"
FT                   /translation="MAPGQLALFSVSDKNGLVEFARNLASVGLNLIASGGTAKALRDAG
FT                   LAVRDVSELTGFPEMLGGRVKTLHPAVHAGILARDIPEDSADMAKLDFNLIRVVVCNLY
FT                   PFGKTVASPGVTVEEAVEHIDIGGVTLLRAAAKNHARVTVVCEPEDYAAVASEMQDSDS
FT                   KDTSLETRRQLALKAFTHTAQYDEAISDYFRKEYSKGVSQMPLRYGMNPHQTPAQLYTL
FT                   KPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGLPAAASFKHVSPAGAAVGIPLSE
FT                   DEANVCMVYDLYKTLTPVATAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDG
FT                   IIAPGYENEALKILSKKKNGNYCVLQMDQSYIPDENEVRTLFGLRLSQKRNNSVVNRSL
FT                   FSNIVTKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLA
FT                   GDKANCWWLRHHPQVLSMKFKTGVKRAEISNAIDQYVTGTIGEGEDLIKWKALFEEVPE
FT                   LLTETEKKEWIDKLNEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACD
FT                   ELGIILAHTNLRLFHH"
XX
SQ   Sequence 2059 BP; 561 A; 448 C; 491 G; 559 T; 0 other;
     aaaaaattct ggtcgcaccg tctccttctg cacgtggtgt tgccgctttt gtccccaact        60
     tgtctgcgga ccccggccgc ctgcagccat ggcacccggc cagctcgctt tatttagtgt       120
     ctctgacaaa aatggccttg tggagtttgc caggaactta gcttctgtcg gtttgaatct       180
     gatcgcctct ggagggactg caaaagccct cagagatgct ggtttggcag tcagagatgt       240
     ctctgagcta actggatttc ctgaaatgct aggggggcgt gtaaaaacct tgcatcctgc       300
     agtccatgct ggaatcttgg ctcgtgatat cccagaagat agtgctgaca tggccaaact       360
     tgatttcaat cttataagag ttgttgtttg taatctgtat ccctttggga agacagtggc       420
     ttctccaggt gtaactgttg aagaggctgt tgaacatatt gatattggag gagtgactct       480
     gctgagagca gcagccaaaa accacgctcg agtgacagta gtatgtgagc cggaggacta       540
     tgcagctgta gcctcagaga tgcaggattc tgacagcaaa gacacgtcct tggagacaag       600
     acgccagtta gccttgaagg cttttactca tacagcacag tatgatgaag caatttcaga       660
     ttacttcagg aaagagtaca gtaaaggagt atctcagatg cccctgaggt atggaatgaa       720
     ccctcatcag actcctgccc agctgtatac gctgaagccc aagctcccta tcacagttct       780
     gaatggagcc cctggattta taaacttgtg tgatgctttg aatgcctggc agctggtgaa       840
     ggaactcaaa gaagctttag gccttccagc tgctgcgtct ttcaaacatg ttagcccagc       900
     aggtgctgct gttggaattc cactcagtga agacgaagcc aacgtctgca tggtctatga       960
     tctgtacaaa accctcacac ccgtagccac tgcatacgca agagcaagag gggctgatag      1020
     gatgtcttcc tttggtgact ttgttgcatt atctgatgtt tgtgatgtcc ctactgccaa      1080
     gattatctcc agagaggtat ctgatggtat tattgccccg ggatatgaaa atgaagcttt      1140
     gaaaatactt tccaaaaaga aaaatggtaa ttactgtgtt cttcagatgg accagtctta      1200
     tattccagac gaaaatgaag ttcgaactct ctttggtctt cgtttaagcc agaagagaaa      1260
     taatagtgtt gtcaacaggt cactgtttag caacattgtt accaagaata aagatttgcc      1320
     agaatctgcg ctcagggacc tcatcgtggc caccattgct gtcaagtaca cccagtcgaa      1380
     ctccgtgtgc tatgccaaga atgggcaggt tattggcatc ggagcaggac agcagtctcg      1440
     tatacactgc acacgccttg caggtgataa ggcaaactgt tggtggctta gacatcaccc      1500
     ccaagtgctt tccatgaagt ttaaaactgg cgtgaagaga gcggaaatct ccaatgccat      1560
     cgatcagtat gttactggaa ctatcggcga gggtgaagat ttgatcaagt ggaaggcact      1620
     gtttgaggag gtccctgagt tgttaaccga gacagaaaaa aaggaatgga ttgacaaact      1680
     taatgaagtt tccatcagct ctgatgcctt ctttcctttc cgggacaatg tagacagagc      1740
     taaaaggagt ggcgtggcct acatcgctgc cccttccggt tctgccgctg acaaagttgt      1800
     gatcgaggct tgcgatgagc tgggaataat ccttgctcat acgaatctcc ggctcttcca      1860
     tcactgactt catcaataca ttattttata ccctgcctct gtgtaggtga aaaatcacat      1920
     acggaatttt gaaaatggcc tttgtttaaa actaaagcat aaaatttaat aatcttcagt      1980
     ctatactgtc ttagttatag gcactgtctt gattattgta acttaataaa ttgtgaaatt      2040
     gggaaaaaaa aaaaaaaaa                                                   2059
//
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