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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC118455; SV 1; linear; mRNA; STD; MAM; 1754 BP.
XX
AC   BC118455;
XX
DT   27-JUN-2006 (Rel. 88, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 6)
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DE   Bos taurus N-acylsphingosine amidohydrolase (acid ceramidase) 1, mRNA (cDNA
DE   clone MGC:140781 IMAGE:8276597), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1754
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (23-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000011257; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000014960; Bos_taurus.
DR   ImaGenes; IMAGp998P0317931Q.
DR   ImaGenes; IRAKp961N22266Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: S. Lobo, M. Taniguchi, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 266 Row: n Column: 22.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1754
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B T1 Phage Resistent cells"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-22"
FT                   /clone="MGC:140781 IMAGE:8276597"
FT                   /tissue_type="Fetal cerebellum, Hereford, 6 month male
FT                   fetus"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1754
FT                   /gene="ASAH1"
FT   CDS             85..1272
FT                   /codon_start=1
FT                   /gene="ASAH1"
FT                   /product="ASAH1 protein"
FT                   /db_xref="GOA:Q17QB3"
FT                   /db_xref="InterPro:IPR003199"
FT                   /db_xref="InterPro:IPR016699"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q17QB3"
FT                   /protein_id="AAI18456.3"
FT                   /translation="MLGWSRLTFILLSGIVTCLVAQQVPPWTEDCRKSTYPPSGPTYRG
FT                   PVPWYTINLDLPPYKRWHELMVVKAPALKVIVNSMKNIVNAFVPSGKIIHLVDQKLPGL
FT                   LGNFPGPFEEEMKGIAAVTEIPLGEIILFNIFYEFFTICTSIITEDKEGHLLHGRNLDF
FT                   GVFLGWNINNDTWVITEELKPLTVNLDFQRNNKTLFKATTFAGYVGMLTGFKPGLFSVT
FT                   LNERFSIDGGFMGVMEWILGKKDAQWVGFIIRSVLENSTSYEETKNILTKTKILAPAYF
FT                   ILGGNQSGEGCVITRDRKQSLDIYELDPKHGRWYVVQTNYDRWKNPFFLDDRRTPAKMC
FT                   LNQTTQENISFATIYDVLSTKPILNKLTVYTVLIDVTKGQFETYLRDCPDPCIGW"
XX
SQ   Sequence 1754 BP; 491 A; 353 C; 424 G; 486 T; 0 other;
     ggtgggcgtg gcctgctcgg cgctcaggtg gtgcctcgtg cggcctcctc aggagtcctt        60
     tgcagcttgt tggtggctgg aaggatgtta ggctggagtc gtctaacctt catcttgctg       120
     agcgggatcg tcacctgctt ggtggcgcag caggtgccac cgtggactga agactgcaga       180
     aaatcaacct atcctccttc agggcccact tacaggggtc cagttccatg gtacaccata       240
     aatctcgatt taccaccgta caaaagatgg catgaattga tggtggtcaa agcaccagcg       300
     ctgaaagtta tagtgaattc catgaagaat atagtaaatg catttgtgcc aagtggaaaa       360
     attatacact tagtggatca aaagttgcct ggtctgcttg gcaacttccc tggccctttc       420
     gaggaggaaa tgaaggggat tgcagctgta actgaaatcc ctttaggaga gattatttta       480
     ttcaatattt tctatgaatt ttttaccatt tgtacttcaa taataacaga agacaaagaa       540
     ggtcatctac tacatgggcg aaacttggat tttggagtat ttcttgggtg gaatataaat       600
     aatgatactt gggtcataac tgaggaacta aaacctttaa cagtgaattt ggacttccag       660
     aggaacaata aaactctctt caaggcaaca acctttgctg gctacgtggg catgttaaca       720
     ggattcaaac caggactgtt tagtgttacg ctcaatgaac gcttcagtat agatggtggt       780
     tttatgggtg tcatggaatg gattttggga aagaaagatg cccagtgggt agggtttatc       840
     attagatcag ttctagaaaa tagcacaagt tatgaagaaa ccaagaatat attgaccaaa       900
     accaagatat tggccccagc atactttatc ctgggaggca accagtctgg ggagggttgt       960
     gtgattacac gagacagaaa acagtctctg gatatatatg aactcgaccc caagcacggt      1020
     agatggtatg tggtacaaac aaattatgac cgatggaaaa atcccttctt ccttgatgat      1080
     cgcagaacac ctgcgaagat gtgtctgaac cagacaaccc aagagaatat ctcatttgca      1140
     accatatatg atgtcttgtc aacaaaacct atcctcaaca agctgacggt gtacacagtc      1200
     ttgatagatg ttaccaaagg tcaatttgag acgtacctgc gggactgccc agacccctgc      1260
     atagggtggt gagcacacac ctggcctaca ggacgcgccc tctatgacgt cgggaccgga      1320
     gctcacgtgg ggctgagtgg agtggcgtcc gatctccttc cagagactca gggcagtttc      1380
     tctttgaggc gtgagcttgt cctgctgagt atgtttatag gtcacaggct gtttttgcca      1440
     taatgtaggt gattgccgtg ttaacaaata acttgtttca gtgaagtgca gcagtcatcc      1500
     agagtttact gtgattcatt ttggtctgac atttggaggc ggggataggc aactaaaaat      1560
     gtggtgggac cctccaggga ataaagccaa gattctctat gagcactgaa tcctgtacct      1620
     ctatgtgagt aagttaaata gccattactc agtttttcac ttttatcttt gtatttgtgg      1680
     tatgtttttg tcttttcctc ctggctctga ctactattaa agtcaataca ctattgtcaa      1740
     aaaaaaaaaa aaaa                                                        1754
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