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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC118402; SV 1; linear; mRNA; STD; MAM; 1909 BP.
XX
AC   BC118402;
XX
DT   27-JUN-2006 (Rel. 88, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 6)
XX
DE   Bos taurus alanine-glyoxylate aminotransferase 2, mRNA (cDNA clone
DE   MGC:140536 IMAGE:8192926), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1909
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (23-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000007690; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000010113; Bos_taurus.
DR   ImaGenes; IMAGp998A2017715Q.
DR   ImaGenes; IRAKp961B07266Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, S. Lobo, L. Guan and S.
CC   Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 266 Row: b Column: 7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1909
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-14"
FT                   /clone="MGC:140536 IMAGE:8192926"
FT                   /tissue_type="Fetal liver, 6 month male fetus, Hereford"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1909
FT                   /gene="AGXT2"
FT   CDS             79..1623
FT                   /codon_start=1
FT                   /gene="AGXT2"
FT                   /product="alanine-glyoxylate aminotransferase 2"
FT                   /db_xref="GOA:Q17QF0"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q17QF0"
FT                   /protein_id="AAI18403.1"
FT                   /translation="MTGAWGHLLRSLHLKTLSLWIPKTCFSLKARAFWTSVTRCGLHTK
FT                   PSMPPCDFTPERYQSLAYSRVLEIHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRY
FT                   LDFFSGIVTVSVGHCHPKVNAAAQRQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKV
FT                   VFLVNSGSEANDLAMLMARAHSNSTDIISFRGAYHGCSPYTLGLTNVGIYKMDLPHGMG
FT                   CQPTMCPDIFHGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSI
FT                   AGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTHD
FT                   VLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGGNPMACAVGSAVLEVIK
FT                   EENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEMVKDKESRQPLPREEVN
FT                   QIHHDCKCMGLLIGRGGLFSQTFRIAPSMCITKPEVDFAVEVFRSALIQHMERRAK"
XX
SQ   Sequence 1909 BP; 540 A; 452 C; 451 G; 466 T; 0 other;
     ggttgagtcc ttgctccgtg ggaagcacag gtttaattgc tcctgcttct gtggggactt        60
     gcttcctgac tgggagaaat gacaggagcc tggggacatt tgctgagatc tttgcacctg       120
     aaaaccttat ctctctggat ccccaagacg tgcttttccc ttaaggcccg tgctttctgg       180
     acatctgtga ccaggtgcgg tcttcataca aagcccagca tgccgccatg tgacttcaca       240
     cccgaaagat accagtccct ggcctatagc cgagtcctgg agatccataa gcaacatctc       300
     tctcctgtgc acaccgccta tttcccggag cccctgttgc tccaccaggg acacgtggag       360
     tggctctttg atcatgaggg aaacagatac ctggatttct tttctgggat tgtcactgtc       420
     agtgttggtc actgccaccc aaaagtaaac gcagcggcgc aaaggcagct gggccgcctg       480
     tggcatacaa gttctgtctt cttccaccct ctgatccacg aatatgcaga gaagctttca       540
     gcacttcttc ctgagccttt gaaggtcgtt ttcttggtga acagtggttc agaagccaat       600
     gacctagcca tgctgatggc cagagcacac tcaaacagca cagacatcat ttctttcaga       660
     ggagcctacc atggatgcag tccttacaca cttggcttga caaatgtagg catctataag       720
     atggacctcc ctcatgggat gggctgccaa ccaacaatgt gcccagacat tttccatggc       780
     ccttggggag gaagccactg ccgagattct ccagtgcaaa caattaggaa gtgcagctgt       840
     gcgccagact gctgtcaagc taaagaccag tatattgaac aattcaaaga tactctgagc       900
     acttctgtgg ccaaatcaat tgctggattt tttgcagagc caattcaagg ggtgaatggc       960
     gttgttcagt acccgaaggg gtttctaaag gaagccttcg agctggtgcg cgagcgggga      1020
     ggcgtgtgca ttgcagatga agtgcagaca ggatttggaa ggctgggctc tcacttctgg      1080
     ggcttccaaa cacacgatgt cctgccagat attgttacca tggctaaagg gattgggaat      1140
     ggctttccca tggcagcagt cgtgacaact ccagatattg ccaagtcctt aaccaagcgc      1200
     atgcttcact tcaatacctt tggagggaac cccatggcct gcgccgttgg ttcagcagtg      1260
     cttgaggtga ttaaagaaga aaatctacaa gaaaatagcc aagaagttgg cacctatatg      1320
     ttgctgaagt tggctaagct gcgggatgaa tttgaaattg taggagatgt ccgaggcaaa      1380
     ggtctcatga taggaataga aatggtgaag gataaggaga gccgccagcc tcttccccgt      1440
     gaagaagtaa atcaaatcca ccacgactgc aaatgcatgg ggcttctgat tggcagaggc      1500
     ggccttttct ctcagacttt ccgcattgcg ccctcaatgt gcatcactaa accagaagtt      1560
     gattttgcag tggaagtgtt tcgctctgcc ttaattcaac acatggagag aagagctaaa      1620
     taaaattttc aagaataaaa acaccacaag cctcaagaac tccccactta tgttcaagag      1680
     ctaatctgag aaattccaaa accactggtc ttggttgtat ggttgactgc ttaccagcca      1740
     tgtttgttag cagagtccct attatcccct attaccttga gaaagccatc cttcaggaaa      1800
     ggatctgact ccctagctca gagaataaat cctaattaat ctgggttaaa aaaaaaaaaa      1860
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aataaaaaaa aaaaaaaaa                  1909
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