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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC116101; SV 1; linear; mRNA; STD; MAM; 1305 BP.
XX
AC   BC116101;
XX
DT   05-MAY-2006 (Rel. 87, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 5)
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DE   Bos taurus chromosome 12 open reading frame 5 ortholog, mRNA (cDNA clone
DE   MGC:139129 IMAGE:8097922), complete cds.
XX
KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1305
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (02-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000016650; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000022146; Bos_taurus.
DR   ImaGenes; IMAGp998G0817416Q.
DR   ImaGenes; IRAKp961L05267Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Lee Alexander, USDA, ARS, NPA
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 267 Row: l Column: 5.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1305
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="L1 Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-17"
FT                   /clone="MGC:139129 IMAGE:8097922"
FT                   /tissue_type="Ascending colon, 6 month male fetus, L1
FT                   Hereford"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:9913"
FT   gene            1..1305
FT                   /gene="C5H12ORF5"
FT   CDS             41..853
FT                   /codon_start=1
FT                   /gene="C5H12ORF5"
FT                   /product="chromosome 12 open reading frame 5 ortholog"
FT                   /db_xref="GOA:Q1JQA7"
FT                   /db_xref="InterPro:IPR001345"
FT                   /db_xref="InterPro:IPR013078"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q1JQA7"
FT                   /protein_id="AAI16102.1"
FT                   /translation="MTRFALTVVRHGETRLNKEKIIQGQGIDEPLSETGFKQAAAAGIF
FT                   LKDVKFTHVFSSDLTRTKQTVHGILEKSKFCKDMTVKYDSRLRERKYGVAEGRPLSELR
FT                   AMAKAAGEECPAFTPPGGETLDQLKRRGKDFFEFLCQLILKEAGQNEQFSQEAPSSCLE
FT                   SSLAEIFPLGKNCASTFNSDSGTPGLAASVLVVSHGAYIRSLLDYFLTDLKCSFPATLS
FT                   RSELTSVSPNTGMTVFILNFEKGGKGRPTAQCVCVNLQGHLAGVNKTP"
XX
SQ   Sequence 1305 BP; 371 A; 269 C; 320 G; 345 T; 0 other;
     cgctgaggtc cttggtcctc tggctccggg cgtgggcggg atgacgcgct tcgctctgac        60
     cgtggtccgg catggagaaa caagacttaa caaggagaaa ataattcaag gacaaggaat       120
     agatgagcct ctttcagaaa ctggatttaa acaagcagct gctgctggta tatttcttaa       180
     agatgtgaag tttactcatg ttttctccag tgaccttaca aggacaaagc agaccgtgca       240
     tgggattttg gagaagagca aattttgcaa agatatgaca gtaaagtatg attcaagact       300
     ccgagaaagg aaatatgggg ttgcagaagg caggccgctg agcgagctga gggccatggc       360
     caaagcggca ggggaggagt gcccagcatt cacaccgcct ggaggagaga ccttggacca       420
     gctgaaaagg cgtgggaaag acttttttga atttctttgt caactgatcc tgaaagaagc       480
     cggtcagaat gaacagtttt cccaggaagc cccgagcagc tgtctggaaa gttccctggc       540
     agagatattt cctttaggga agaactgtgc ctccacgttt aactctgaca gcggcacccc       600
     gggcctagca gccagtgtct tagtcgtgag tcatggcgcc tacatacgaa gcctgttgga       660
     ttactttctg actgacctca agtgctcgtt cccagcgact ctgagcaggt ccgagctcac       720
     gtcagtcagc cctaacacag ggatgactgt cttcatccta aactttgaga aaggaggcaa       780
     agggagacca actgcccagt gtgtgtgtgt gaacctccag ggccacctgg ccggggtgaa       840
     caaaactccc taaatctgaa tcatctgcat ggaaatcagc acatgtgagc ctctgaggga       900
     gtgcctcttg actttacttc cgtcctctgc taatgcagat ttggaaacag ttaaaaagct       960
     gtctgttaca gcaggttata aaactcgagt ggaatcagag ccatgtaaaa cactaataga      1020
     aaaccatcga aaatggactt ctttggtgca agtacagttg gaattttcca gggtaatttt      1080
     accaccctgc tcagtgacct ctctgtattg taaatggatg agggaactca gtattgtgaa      1140
     ttgaggcatg aataaccctg ttactatggt ttggggtttt tttttggttt tttttttcac      1200
     ctttttaata tctttttttt ttttttaatg tttttctttt atgtctgaaa aatctaactt      1260
     gttttcttgg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa                      1305
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