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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC113251; SV 1; linear; mRNA; STD; MAM; 1565 BP.
XX
AC   BC113251;
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DT   17-FEB-2006 (Rel. 86, Created)
DT   24-JAN-2007 (Rel. 90, Last updated, Version 5)
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DE   Bos taurus RNA terminal phosphate cyclase domain 1, mRNA (cDNA clone
DE   MGC:138072 IMAGE:8084868), complete cds.
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KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RC   NIH-MGC Project
RP   1-1565
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (14-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000006321; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000008293; Bos_taurus.
DR   ImaGenes; IMAGp998G1017382Q.
DR   ImaGenes; IRAKp961I04264Q.
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CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Lee Alexander, USDA, ARS, NPA
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Taniguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Bala M, Barber S, Babakaiff R, Beland J, Chand S, Chun E,
CC   Del Rio L, Gibson S, Kirkpatrick R, Liu J, Matsuo C, Mayo M,
CC   Palmquist D, Santos RR, Stott J, Tsai M, Wong D, Wynhoven B, Hanson
CC   R, Siddiqui A, Holt R, Jones SJ, Marra MA
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 264 Row: i Column: 4.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1565
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="L1 Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-16"
FT                   /clone="MGC:138072 IMAGE:8084868"
FT                   /tissue_type="Uterus, 8.5 month old female L1 Hereford"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:9913"
FT   gene            1..1565
FT                   /gene="RTCD1"
FT   CDS             177..1277
FT                   /codon_start=1
FT                   /gene="RTCD1"
FT                   /product="RNA terminal phosphate cyclase domain 1"
FT                   /db_xref="GOA:Q2HJ88"
FT                   /db_xref="InterPro:IPR017770"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q2HJ88"
FT                   /protein_id="AAI13252.1"
FT                   /translation="MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRST
FT                   PGLRPQHLSGLEMIRDLCDGQLEGAEIGSTEITFTPEKIKGGVHTADTKTAGSVCLLMQ
FT                   VSMPCVLFAACPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPK
FT                   GGGEVIVRMSPVKQLSPINLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEI
FT                   RDLYVNIQPVQEPKDQAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEML
FT                   LANLRHGGAVDEYLQDQLIIFMALASGISRIKTGPVTLHTQTAIHFAEQLAKAKFTVKK
FT                   SEDEEDASKDTYIIECQGIGMTNPNL"
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SQ   Sequence 1565 BP; 446 A; 307 C; 408 G; 404 T; 0 other;
     gcggagttgg gcgttcccgc agccggcgag tttcctgctt ttcccgggag cccggcggtc        60
     ctgagcgggg agcggggacc caggctccgg agctgcaggg caggagtccg cgtatcctct       120
     ttctccggtt ccggccgagg ctaagtcgcg gggggccggg ccccagcacg ctccccatgg       180
     ctgggccgcg ggtggaggtg gacggcggca tcatggaagg gggcgggcag atcctgaggg       240
     tgtctacggc cctgagctgt ctgctgggcc tccctttgcg ggtgcagaag atccgagccg       300
     gccgcagcac gccgggcctc aggcctcaac atttatctgg actggaaatg attcgagatt       360
     tgtgtgatgg gcaactggag ggggcagaaa tcggctcaac agaaataacg tttacaccag       420
     agaagatcaa aggtggagtc cacacagcag ataccaagac agcagggagt gtctgcctct       480
     tgatgcaggt ctcaatgccc tgtgttctct ttgctgcttg tccatcagaa ctccgtttga       540
     aaggtgggac taatgctgaa atggcaccac agattgatta cacagccatg gttttcaagc       600
     caattgttga aaaatttggt ttcacattta attgtgacat taaaatgagg ggctactacc       660
     caaagggagg tggtgaagtg attgtccgaa tgtcgccagt taaacagttg agcccaataa       720
     atttaactga ccgtggctgt gtgactaaga tatatggaag agcttttgtt gctggtgttt       780
     tgccatttaa agtagcaaaa gatatggcgg cagcagccgt aagatgcatc aggaaggaga       840
     ttagggatct gtatgttaac atccagcctg ttcaggaacc taaagaccaa gcttttggca       900
     atggaaatgg aataatcatc attgccgaga cgtccactgg ctgtctgttt gctggatcgt       960
     cgcttggtaa acgaggtgtt aatgcagaca aggttggaat tgaagctgct gaaatgctgt      1020
     tagcaaatct tagacatggt ggtgctgtgg atgagtatct gcaagaccag ctgatcattt      1080
     ttatggcatt agccagtgga atttccagaa taaaaacagg accagttaca ctccacaccc      1140
     aaacagctat acattttgct gagcaactag caaaggctaa atttactgtg aagaaatcag      1200
     aagatgaaga agatgcctct aaagacactt atattattga atgccaagga atcgggatga      1260
     caaatccaaa tctatagggt atttgccttt taaatgatac ttcaatgatg ttattgcact      1320
     aatcatttca taaatattat agaacaatgg aataagatgt aatttattaa aggacctaac      1380
     tttaattgaa gtatagaatg ttctagattt gctgagaatg cttcatccaa ttaatctcat      1440
     tttgactatc ttctgggata gagacagtga ataagttggt ggatatgtat aatagttgat      1500
     ttcggtatta aagtattaca ataaaatatt cttttcatct aaaaaaaaaa aaaaaaaaaa      1560
     aaaaa                                                                  1565
//
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