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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC112666; SV 1; linear; mRNA; STD; MAM; 2108 BP.
XX
AC   BC112666;
XX
DT   03-FEB-2006 (Rel. 86, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 5)
XX
DE   Bos taurus 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
DE   (mitochondrial), mRNA (cDNA clone MGC:137181 IMAGE:8026620), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-2108
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (31-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000003898; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000005088; Bos_taurus.
DR   ImaGenes; IMAGp998L1017231Q.
DR   ImaGenes; IRAKp961N10262Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 262 Row: n Column: 10.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2108
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-05"
FT                   /clone="MGC:137181 IMAGE:8026620"
FT                   /tissue_type="Testis, 7 year old male, Hereford"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..2108
FT                   /gene="HMGCS2"
FT                   /note="synonym: hmgCoA"
FT   CDS             51..1577
FT                   /codon_start=1
FT                   /gene="HMGCS2"
FT                   /product="3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
FT                   (mitochondrial)"
FT                   /db_xref="GOA:Q2KIE6"
FT                   /db_xref="InterPro:IPR010122"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q2KIE6"
FT                   /protein_id="AAI12667.1"
FT                   /translation="MQRLLTPVRQVLQVKRVMQEASLLPARLLPAAHPSFSTVPAVPLA
FT                   KTDTWPKDVGILAMEVYFPAQYVDQTELEKFNKVEAGRYTVGLGQTQMGFCSVQEDVNS
FT                   LCLTVVQQLMERTQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTT
FT                   NACYGGTASLFNAANWMESSSWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLVGPEA
FT                   PLVLERGLRGTHMENVYDFYKPDVTSEYPLVDGKLSIQCYLRALDKCYAFYRQKIEKQW
FT                   KQAGIDRPFTLDDVQYMIFHTPFCKLVQKSLARLMFNDFLLASGDTQTGIYKGLEAFRG
FT                   LKLEDTYTNKDVDKAFLKASLNMFNKKTKNSLYLSTYNGNMYTSSLYGCLASLLAHHSA
FT                   QDLAGSRIGAFSYGSGLAASFFSFRVSQDASPGSPLEKLVSSTSDLQKRLASRKRVSPE
FT                   EFTEIMNQREQYYHKMNFSPPGDKNSLFPGTWYLERVDELYRRKYARRPV"
XX
SQ   Sequence 2108 BP; 570 A; 530 C; 511 G; 497 T; 0 other;
     atctcccccg aggactgtga attgctggct ttctgctcac tcctccgaaa atgcagcggc        60
     tgttgactcc agtgaggcag gtgttgcaag tgaagagagt gatgcaagaa gcttccctcc       120
     tgcctgcccg ccttctccca gcagcccacc ccagtttttc tacagttccg gctgtcccct       180
     tggccaaaac agatacttgg ccaaaggatg tgggtattct tgccatggag gtctactttc       240
     cagcccaata tgtggaccaa acagagctgg agaagtttaa caaagtggag gcagggaggt       300
     acaccgtggg cttgggccag acccagatgg gcttctgctc agtccaggag gatgtcaact       360
     ccctgtgcct gacggtggtg caacagctga tggagcgcac gcagctcccc tgggactctg       420
     tgggccgcct ggaagtgggc actgagacca tcatcgataa gtccaaggct gtcaaaacag       480
     tgcttatgga gctcttccag gattcaggca acactgacat tgagggcata gataccacca       540
     atgcctgcta cggtggcact gcctccctct tcaatgctgc caactggatg gaatccagct       600
     cctgggatgg tcgctatgca ctggtggtct gtggggacat cgcagtctac cccagtggta       660
     acgctcgccc cacaggcggg gctggagctg tggcaatgct ggttgggcct gaggcccctc       720
     tggtcctcga gagagggctt agaggaaccc acatggagaa tgtgtacgac ttctacaaac       780
     cagatgtgac ttcagagtac ccactggtgg atgggaagct ctccatccag tgctacttac       840
     gggccctgga caaatgctat gcattctacc gtcaaaagat cgagaaacag tggaagcaag       900
     ctggcatcga tcggcctttc actctcgatg atgtgcagta tatgattttt cacacgcctt       960
     tctgcaagtt agtccagaaa tccctggccc gcctgatgtt caatgacttc ctgttggcca      1020
     gtggtgacac acagactggc atctacaagg gcttggaggc cttcagggga ctaaagctgg      1080
     aagacaccta caccaataag gatgtagata aagcatttct aaaagcctct ctgaacatgt      1140
     tcaataagaa aaccaagaac tccctctacc tctccacgta caacgggaat atgtacacct      1200
     catccctata tggatgcctg gcctcacttc tggcccatca ctctgcccaa gacttggctg      1260
     gctccaggat cggtgccttc tcttatggct ctggtttggc agcaagtttc ttttctttcc      1320
     gggtgtccca ggatgcttct ccaggctccc cactggagaa gctggtatcc agtacatcag      1380
     acctgcagaa acgtcttgcc tcccggaagc gtgtgtctcc tgaggagttc acagaaataa      1440
     tgaaccaaag agaacaatac taccacaaga tgaatttctc accacctggt gataagaaca      1500
     gccttttccc aggcacttgg tacctggagc gagtggatga gctgtatcgc aggaagtacg      1560
     cccggcgtcc cgtttaaagg tgatatgtgg agagtttcct gggaaaagtg ctacagaacg      1620
     tctgccctct ttcaactgta taaagccccc actcttagct ggtaaataga ttgcactgga      1680
     cacagcagcc ttgtaaacac tggccccata gaatgagggg ccatcctgaa tgggtccttc      1740
     tgcctttccc tgctgcaatc actgtcatgg gcttgcagag ccctttctga agaggtggcg      1800
     ggacagagga gagactcagc cttgaatcac agaccgaaag tgtggcgggt ccattgtctc      1860
     cttcaagatc cagataactc gcctctcgtt tgttatagct ttgtcattat tgttattact      1920
     acatttccaa gctggtatgt ctttgtttct tagggttttc tgtgaatttc taaattccat      1980
     gtttggtact aagtgaaaat aacaattaaa aagcaaagaa gcaaaaaaaa aaaaaaaaaa      2040
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa ataaaaaaaa      2100
     aaaaaaaa                                                               2108
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