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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC112550; SV 1; linear; mRNA; STD; MAM; 1693 BP.
XX
AC   BC112550;
XX
DT   03-FEB-2006 (Rel. 86, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 5)
XX
DE   Bos taurus tryptophan 2,3-dioxygenase, mRNA (cDNA clone MGC:137308
DE   IMAGE:8019202), complete cds.
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KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1693
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (31-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000011062; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000014690; Bos_taurus.
DR   ImaGenes; IMAGp998G0817212Q.
DR   ImaGenes; IRAKp961I10262Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 262 Row: i Column: 10.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1693
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-05"
FT                   /clone="MGC:137308 IMAGE:8019202"
FT                   /tissue_type="Testis, 7 year old male, Hereford"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1693
FT                   /gene="TDO2"
FT                   /note="synonym: TRPO"
FT   CDS             65..1285
FT                   /codon_start=1
FT                   /gene="TDO2"
FT                   /product="tryptophan 2,3-dioxygenase"
FT                   /db_xref="GOA:Q2KIQ5"
FT                   /db_xref="InterPro:IPR004981"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q2KIQ5"
FT                   /protein_id="AAI12551.1"
FT                   /translation="MSGCPFLGKSFGYAFKPLSAQGSEEDKSQAGVNRASKGGLIYGNY
FT                   LQLEKVLNAQELQSEMKGNKIHDEHLFIITHQAYELWFKQILWELDSVREIFQNGHVRD
FT                   ERNMLKVITRMHRVVVILKLLVQQFSVLETMTALDFNDFREYLSPASGFQSLQFRLLEN
FT                   KIGVLQSLRVPYNRRHYRDNFRGKDNELLLKSEQERTLLQLVEAWLERTPGLEPHGFNF
FT                   WGKLEKNIVKGLEEEFTKIQAKEESEEKEEQMAEFQKQKEVLLSLFDEKRHEHLLSKGE
FT                   RRLSYKALQGALMIYFYREEPRFQVPFQLLTFLMDVDSLMTKWRYNHVCLVHRMLGSKA
FT                   GTGGSSGYQYLRSTVSDRYKVFVDLFNLSTYLVPRHWIPKMNPVIHKFLYTAEYCDSSY
FT                   FSSDESD"
XX
SQ   Sequence 1693 BP; 527 A; 332 C; 373 G; 461 T; 0 other;
     gaggtcagcc tcatcatcca gctacagtta gagctctggg ctgccctgac agtgtatctt        60
     catcatgagt gggtgcccct ttttaggaaa gagctttgga tatgctttta aaccactctc       120
     tgcacaaggc agtgaagaag acaaatcaca ggccggtgtg aacagagcca gtaaaggagg       180
     acttatctat gggaactacc tgcaattgga aaaagttttg aatgcacagg agcttcaaag       240
     tgaaatgaaa ggaaataaaa tccacgatga acatcttttt atcataactc atcaagctta       300
     tgaactctgg tttaagcaga tcctgtggga attagattct gttcgtgaga tctttcagaa       360
     tggccatgtg agggatgaga ggaacatgct gaaggtgatc acccgaatgc accgagtggt       420
     ggtgatcctc aaactcttgg tccagcagtt ttccgtcctg gagaccatga cagccttgga       480
     cttcaatgac ttcagagagt acttatcccc ggcgtccggc ttccagagtc tgcagttccg       540
     cctgttagaa aacaagatag gggttctgca gagcttgagg gtcccttaca acagaagaca       600
     ctaccgcgac aacttcagag ggaaagacaa cgagcttctg ctgaagtccg agcaagaaag       660
     gacgcttctg cagctggttg aggcatggct ggaaagaacc ccaggtttag agccgcatgg       720
     atttaacttc tggggaaagc ttgaaaagaa cattgtcaaa ggtttggaag aagaattcac       780
     aaagattcag gctaaggaag agtcagagga aaaggaggaa caaatggctg aatttcagaa       840
     gcagaaagag gtattactgt ccttatttga tgagaaacgt catgagcatc tccttagtaa       900
     aggagaaaga cggctatcgt acaaagcact tcagggggcc ttgatgatat atttttacag       960
     ggaagagccc aggttccagg tccctttcca gctgctgact ttcctcatgg atgtggactc      1020
     actcatgacc aagtggagat ataaccacgt gtgcctggtg cacaggatgc tcggcagcaa      1080
     ggcgggcact ggcgggtcct ctgggtacca gtacctgcgc tccaccgtga gtgacaggta      1140
     caaagtattt gtagatttat ttaatctctc aacatatctg gttccccgac actggattcc      1200
     gaagatgaac ccagtcattc ataagttcct ttacacggct gaatactgtg acagctctta      1260
     cttcagcagt gatgaatcag attaaaatca tctgcaaaaa tctatgaatt tgctttctca      1320
     gtctgcattt aaaatttttt ctatgaattt tcatgactat acagagtcct aatgtaatat      1380
     atgtacttac atatatatac atatatagca tatattaaac atatagtact gtagcactga      1440
     ttcaaaccta gaaataattt tatcacctca tgtttgtgat aacagactaa acattaagat      1500
     aagaaattca gttaaattat aacattgtac atagtgtatt ttcctgttaa aaacaatgtc      1560
     ctagtactta tcttaatgta gccatgtaat gcaatggtta tctcatttca aacattgtaa      1620
     gcttgtaaac ttcagctgtt tcaaatattt tatggaataa aatgtgtcat tctgtacaaa      1680
     aaaaaaaaaa aaa                                                         1693
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