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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC111260; SV 1; linear; mRNA; STD; MAM; 1781 BP.
XX
AC   BC111260;
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DT   10-DEC-2005 (Rel. 86, Created)
DT   02-NOV-2007 (Rel. 93, Last updated, Version 6)
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DE   Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
DE   N-acetylgalactosaminyltransferase-like 5, mRNA (cDNA clone MGC:133911
DE   IMAGE:8061119), complete cds.
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KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RC   NIH-MGC Project
RP   1-1781
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (07-DEC-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000003384; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000004386; Bos_taurus.
DR   ImaGenes; IMAGp998I2117321Q.
DR   ImaGenes; IRAKp961D09259Q.
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CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Y. Meng, M. Taniguchi, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 259 Row: d Column: 9.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1781
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-04"
FT                   /clone="MGC:133911 IMAGE:8061119"
FT                   /tissue_type="Liver, 6 month old female calf, Crossbred x
FT                   Angus"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1781
FT                   /gene="GALNTL5"
FT   CDS             285..1631
FT                   /codon_start=1
FT                   /gene="GALNTL5"
FT                   /product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
FT                   N-acetylgalactosaminyltransferase-like 5"
FT                   /db_xref="GOA:Q2T9U7"
FT                   /db_xref="InterPro:IPR001173"
FT                   /db_xref="UniProtKB/TrEMBL:Q2T9U7"
FT                   /protein_id="AAI11261.1"
FT                   /translation="MRNVIIQCLLCASLTFGIWIAVFNIYLHYNHVKKQEKIQEKGNPL
FT                   IWSLGEKLQSKPDSVHLPRAYNVRVERASEDEPAEPKLLLSSGENFNYSIPEVIHGYST
FT                   YGFNSIISKNLGHYRNVPDTRNVMCQKKMYPAKLPTASIIICFHNEEFNALFRTLSSIM
FT                   TLTQQYILEEIILVDDMSDFDDLKEKLDYHLEIFRGKIKLIRNKKREGLIRARMTGASH
FT                   ASGDVLVFLDSHCEVNKVWLEPLLNAIAKDPKMVVCPLIDVIDYMTLEYQPSPIVRGAF
FT                   NWRLEFKWDHVLSYEIEGPEGPTTPIRSPAMAGGIFAINRHYFNEIGQYDKGMNLWGGE
FT                   NLELSLRIWMCGGQLYVIPCSRVGHINRQHVTNRFEIMKVVEYNNLRLVHTWLDEYKGQ
FT                   FFLRRPALKSAAYGNISERVELRKRLGCKSFQWYLDTIFPELEASKAIS"
XX
SQ   Sequence 1781 BP; 579 A; 343 C; 389 G; 470 T; 0 other;
     aagtaatttg ctcagaatcc aggcgccact gagtcagcca ttcaggagga aattccatct        60
     ttgagatcat ttgttgagca tagagtcctg cccaaatctt cctatgaccc aacttggaga       120
     atacatcgac tccatagcag ccagtgtttg tctcagcgca cgtaaggttt agtgaagaaa       180
     ataattgaac atgatttcct tctgagacag cagagttgaa aagccaatca cagacctatc       240
     tcttggaaat attaaaacgg accttcaaaa atgctaggtt tacaatgaga aatgttataa       300
     ttcagtgttt actctgtgcc tccttgacat tcggcatctg gatagccgtc tttaatattt       360
     atcttcacta caatcatgtg aagaagcaag agaagatcca ggaaaaagga aatccattaa       420
     tttggtccct tggagaaaaa ctgcaaagca aacctgactc agtgcactta ccgagagctt       480
     acaacgtgag agtggaaagg gctagtgaag atgaacccgc agaacccaag ttgttgttaa       540
     gttcaggtga gaattttaac tattcaatcc cagaagttat tcatggatat tcaacatatg       600
     gatttaattc cattatcagt aaaaacttgg gccactacag aaacgtgcca gataccagga       660
     atgtcatgtg tcagaaaaaa atgtacccag ccaaactacc tactgccagc atcatcattt       720
     gcttccacaa tgaagaattt aatgccttgt ttcgaacact gtccagcatc atgaccctca       780
     ctcaacagta tatccttgaa gaaattattt tggtagacga catgagtgat tttgatgatt       840
     tgaaagagaa actcgactat cacttggaaa tttttcgagg aaagattaaa ttaataagaa       900
     acaaaaagag agaggggctg attcgagcaa ggatgacggg agcatcccat gcttcagggg       960
     acgttctagt gtttctggat agccactgtg aggtgaataa agtctggctg gagcccttgc      1020
     tgaatgccat tgccaaggac cccaaaatgg tggtgtgtcc tctgatagac gtcattgatt      1080
     acatgaccct ggaataccag ccttctccta tagtgagggg agctttcaac tggcgtctgg      1140
     aatttaaatg ggatcatgtt ctgtcttatg agatagaggg accagaagga cccactacac      1200
     ctatccggtc acctgcaatg gctggaggaa tttttgctat aaataggcat tattttaatg      1260
     aaattggaca gtacgacaag ggcatgaatc tgtggggagg agaaaacttg gaactttcac      1320
     taaggatctg gatgtgtgga ggccagctct atgtaatccc ctgctctcga gttggacaca      1380
     tcaataggca acacgtgaca aaccgctttg aaattatgaa agtcgtggaa tataacaatc      1440
     tcagactggt acacacttgg ctagatgaat acaagggaca gttttttcta cgaagacccg      1500
     ctctgaagtc tgctgcctat ggaaacatta gtgagcgtgt tgagttaagg aaacgattgg      1560
     gttgcaagtc atttcagtgg tatttggata ctatcttccc agaattggag gcatctaagg      1620
     caatctcatg aaaggaaaac cagttgtttc cattaataaa gggttaaaaa gtcccctagt      1680
     ccttcaacat agagaaggga caagtttgga ccattatgaa attatgtgaa atacaataat      1740
     aaatacaacc agaatggttg acaccaaaaa aaaaaaaaaa a                          1781
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