EBI Dbfetch

ID   BC105839; SV 1; linear; mRNA; STD; ROD; 2098 BP.
XX
AC   BC105839;
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DT   18-OCT-2005 (Rel. 85, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 3)
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DE   Rattus norvegicus exostoses (multiple) 1, mRNA (cDNA clone IMAGE:7453681),
DE   partial cds.
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KW   .
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OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-2098
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2098
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (30-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000020137.
DR   Ensembl-Gn; ENSRNOG00000024886; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000037809; Rattus_norvegicus.
DR   ImaGenes; IMAGp998O2315712Q.
DR   ImaGenes; IRAKp961K13244Q.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Howard Jacobs
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 244 Row: k Column: 13.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2098
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_MGC_238"
FT                   /clone="IMAGE:7453681"
FT                   /tissue_type="Testis, rat (Brown Norway)"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:10116"
FT   gene            <1..2098
FT                   /gene="Ext1"
FT   CDS             <1..1676
FT                   /codon_start=3
FT                   /gene="Ext1"
FT                   /product="Ext1 protein"
FT                   /db_xref="GOA:Q3B8R0"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="InterPro:IPR015338"
FT                   /db_xref="UniProtKB/TrEMBL:Q3B8R0"
FT                   /protein_id="AAI05840.1"
FT                   /translation="HLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSI
FT                   PLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVL
FT                   LLTTCKHGKDWQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQ
FT                   AACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKILALRQQTQFL
FT                   WEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLIWNKHPGGLFVLPQYSSYLGDFPYYYA
FT                   NLGLKPPSKFTAVIHAVTPLVSQSQPVLKLLVAAAKSQYCAQIIVLWNCDKPLPAKHRW
FT                   PATAVPVIVIEGESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPER
FT                   IVGYPARSHFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVD
FT                   QLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMN
FT                   TFASWFGYMPLIHSQMRLDPVLFKDQVSILRKKYRDIERL"
XX
SQ   Sequence 2098 BP; 605 A; 490 C; 473 G; 530 T; 0 other;
     atcatttaat ttttaattta tattctggca cttggcctga ctacaccgag gacgtggggt        60
     ttgacatcgg ccaggcgatg ctggccaaag ccagcatcag tactgaaaac ttccgaccaa       120
     actttgatgt ttctattccc ctcttttcta aggatcatcc caggacagga ggggagaggg       180
     ggtttttgaa atttaacacc atccctcccc tcaggaagta catgctggta ttcaagggga       240
     agaggtacct gacagggata gggtcagaca ccaggaatgc cttatatcac gtccataacg       300
     gggaggacgt cttgctcctc accacctgca agcatggcaa agactggcaa aagcacaagg       360
     attctcgctg tgacagagac aacaccgagt atgagaaata tgattatcgg gaaatgctgc       420
     acaatgccac tttctgtctg gttcctcgtg gtcgcaggct tgggtccttc agattcctgg       480
     aggctttgca ggctgcctgt gtccctgtaa tgctcagcaa tggatgggag ttgccattct       540
     ccgaagtgat aaattggaac caagctgccg tcataggcga tgagagattg ctattacaga       600
     ttccttctac aatcaggtct attcatcagg ataaaatcct agcacttaga cagcagacac       660
     agttcttgtg ggaggcttat ttttcttcag ttgagaagat tgtattaact acactagaga       720
     ttattcagga cagaatattc aagcacatat cacgtaacag tttaatatgg aacaaacatc       780
     ctggaggatt gttcgtccta ccacagtatt catcctacct gggagatttt ccttactact       840
     atgctaattt aggtctaaag cccccctcca aattcactgc agtcatccat gctgtgaccc       900
     ccctggtctc tcagtcccag ccagtgttga agcttcttgt ggcagcagcc aaatcccagt       960
     actgtgcaca gattatagtt ctgtggaatt gtgacaagcc tctaccagcc aaacaccgct      1020
     ggcctgccac tgccgtgcct gtcatcgtca ttgaaggaga aagcaaggtt atgagcagcc      1080
     ggtttctgcc ctatgacaac atcatcactg atgctgtgct cagccttgat gaggacactg      1140
     tgctttcaac cacggaagtg gattttgcct tcactgtatg gcagagcttc ccggagagga      1200
     ttgtgggata tcctgcacgc agccatttct gggataactc aaaggagcga tggggatata      1260
     catccaagtg gacgaatgac tactccatgg tgttgacagg agctgctatc taccacaaat      1320
     attatcacta cctgtattcc cattacctgc cagccagcct gaagaacatg gtagaccaac      1380
     tggccaactg tgaggacatt ctcatgaatt tcctggtgtc tgctgtgacg aaattgcctc      1440
     caatcaaagt gacccagaag aaacagtata aggagacaat gatgggacag acttcccgag      1500
     catctcgctg ggctgaccct gaccactttg cccagcgaca gagctgcatg aatacgtttg      1560
     ccagctggtt tggctacatg ccgctgatcc actctcagat gaggctcgac ccggtcctct      1620
     ttaaagacca agtctcaatc ctgaggaaga aatacagaga cattgaacga ctttgaggaa      1680
     tcccactgag tgggggaggg gaggcaagat gggactggag tccagttgct ctctcctccc      1740
     agtgcagatc tgctcatgcc catcggtgga gccagactgt gccaagtatc aaaaaatgaa      1800
     aaaaaaaata aatataaaaa aaacaaaaaa gattttaaaa aagaaaagga aaaaaacagc      1860
     ttagatgaac acagtgacaa aactcggctg gaatcctggc tcctggggcc gcgccagact      1920
     gctccattca cctcactggc ttctgtgtcc cacgactagg ttgtgtacag tttaattatg      1980
     gaacattaaa taattatttt tgaaatgatt gctatgcagg tttaaacttt tttaatgatc      2040
     aaaactatta aaaaccagag ttctttcttt aatcaaaaaa aaaaaaaaaa aaaaaaaa        2098
//