EBI Dbfetch

ID   BC105774; SV 1; linear; mRNA; STD; ROD; 2321 BP.
XX
AC   BC105774;
XX
DT   02-OCT-2005 (Rel. 85, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 7)
XX
DE   Rattus norvegicus aspartyl-tRNA synthetase 2 (mitochondrial), mRNA (cDNA
DE   clone MGC:124683 IMAGE:7930977), complete cds.
XX
KW   MGC.
XX
OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-2321
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2321
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (30-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   ASTD; TRAN00000007608.
DR   Ensembl-Gn; ENSRNOG00000002813; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000003828; Rattus_norvegicus.
DR   ImaGenes; IMAGp998O0716351Q.
DR   ImaGenes; IRAKp961E23243Q.
DR   ImaGenes; IRBPp993D0848D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Jeff Green/Paturu Kondaiah, NCI.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 243 Row: e Column: 23
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 77627986.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2321
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Pr49"
FT                   /clone="MGC:124683 IMAGE:7930977"
FT                   /tissue_type="Prostate, pool of NCI_CGAP_Pr30, 40, 41 and
FT                   NCI_CGAP_Pr29, 39, 42"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:10116"
FT   gene            1..2321
FT                   /gene="Dars2"
FT                   /note="synonyms: MGC124683, RGD1308286"
FT   CDS             108..2066
FT                   /codon_start=1
FT                   /gene="Dars2"
FT                   /product="aspartyl-tRNA synthetase 2 (mitochondrial)"
FT                   /db_xref="GOA:Q3KRD0"
FT                   /db_xref="InterPro:IPR002312"
FT                   /db_xref="InterPro:IPR004115"
FT                   /db_xref="InterPro:IPR004364"
FT                   /db_xref="InterPro:IPR004365"
FT                   /db_xref="InterPro:IPR004524"
FT                   /db_xref="InterPro:IPR006195"
FT                   /db_xref="InterPro:IPR012340"
FT                   /db_xref="InterPro:IPR016027"
FT                   /db_xref="InterPro:IPR018150"
FT                   /db_xref="InterPro:IPR018153"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3KRD0"
FT                   /protein_id="AAI05775.1"
FT                   /translation="MYLGSWLNRLGRGLSRPIGKTKQPIWGSLSRSLTLSSQRVPEFSS
FT                   FVARTNTCGELRSSHLGQEVTLCGWIQYRRQNTFLVLRDCHGLVQILIPQDESAASVRR
FT                   TLCEAPVESVVRVSGTVIARPLGQENPKMPTGEIEIKAKTAELLNACKKLPFEIKDFVK
FT                   KTEALRLQYRYLDLRSSQMQHNLRLRSQMVMKMREYLCTLHGFVDIETPTLFKRTPGGA
FT                   KEFLVPSREPGRFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQID
FT                   IEMSFVDQTGIQHLVEGLLHYSWPEDKDPLVAPFPSMTFAEALATYGTDKPDTRFGMKI
FT                   VDISDVFRNTEIRFLQDALAKPQGTVKAICVHEGAKYLRKEDIEFIRKFAAHHFSQEVL
FT                   PIFLNARKNWSSPFAKFITEEERLELTRLMEIQEDDMVLLTAGQHEKACSLLGKLRLEC
FT                   ADLLETRGLALRDPALFSFLWVLDFPLFLAKEESPTELESAHHPFTAPHPGDIHLLYTE
FT                   PEKVRGQHYDLVLNGNEIGGGSIRIHDAQLQRYILETLLKEDVKLLSHLLQALDYGAPP
FT                   HGGIALGLDRLVCLVTGAPSIRDVIAFPKSYRGHDLMSNAPDTVSPEDLKPYHIHVSWP
FT                   TDSEERASATPSKYLSS"
XX
SQ   Sequence 2321 BP; 654 A; 516 C; 559 G; 592 T; 0 other;
     ggcctggatg catttgcgtg ggaagtagaa ttttaagggt tccctggtat tccaaagccg        60
     agttttgagc accaccacac ctgcagcgcg gattccggga cttcaacatg tatcttggtt       120
     cttggttaaa tcgtctaggc aggggtttat ccagacccat cggaaagacc aagcagccaa       180
     tctggggttc tctttccaga agtctgacgt tgagttcaca gagagttcca gaattcagta       240
     gctttgttgc tcggaccaac acatgtggag aacttcgttc ttcccactta ggccaagaag       300
     tcactctgtg tggatggatt cagtaccgaa ggcaaaacac cttcttagtc ctaagagatt       360
     gccacggtct cgttcaaatc ctcattcccc aggatgagtc ggctgcatct gtgaggagga       420
     ctttgtgtga agcccctgtg gagtctgtgg tgagagtatc tgggacggtc atcgcccgac       480
     ccctgggaca ggagaatccg aaaatgccaa caggtgagat tgaaatcaaa gctaaaacag       540
     ctgagctcct gaatgcctgc aaaaagctgc cctttgaaat taaagacttt gtgaagaaga       600
     cggaagccct tcgtctgcag tatcggtact tagacctgcg cagctcccaa atgcagcaca       660
     acctgcggct caggtcacag atggtcatga aaatgcggga atatctctgt actctgcacg       720
     gatttgtgga tatagaaacc ccaacattgt ttaagaggac tcctggaggt gccaaggagt       780
     ttttagtacc gtccagggaa cctggaaggt tttattctct ccctcagagt cctcaacagt       840
     ttaagcagct tctgatggtt ggtggtttag acaggtactt tcaggttgcc cggtgttatc       900
     gagatgaagg ctcaagaccg gataggcagc cagagtttac tcagattgac atagagatgt       960
     cctttgtaga ccagactggc attcagcatt tagttgaggg tttgctgcat tattcctggc      1020
     ctgaagataa agaccctcta gtggctcctt ttccttccat gacttttgct gaggcattgg      1080
     ctacctacgg aactgataag ccagatactc gctttgggat gaagattgtg gatatcagtg      1140
     atgtgttcag aaacacagag atcaggtttc ttcaggatgc actggctaag ccccaaggaa      1200
     ctgtcaaagc aatatgtgtt catgaaggag caaagtactt aaggaaagaa gacattgagt      1260
     tcattcgaaa gtttgcagct caccatttca gtcaggaagt ccttcctata ttcctgaatg      1320
     ccaggaagaa ctggagttca ccatttgcta aattcataac ggaggaggaa agattggagt      1380
     taaccagatt gatggagata caagaagacg acatggtgct gctgactgct gggcaacatg      1440
     agaaagcatg ctctttgttg gggaagttac gactagagtg tgcagacctt ttggaaacga      1500
     gaggactggc gctcagggac ccagcattgt tctcttttct ctgggtactt gacttcccac      1560
     tcttcctcgc caaggaagag agtcccacag agctggagtc agcccaccac ccatttactg      1620
     ctcctcaccc cggcgacatt cacctcctct acactgagcc ggaaaaggtt cgtggccaac      1680
     actacgactt ggttttaaat ggcaatgaga taggaggagg ctctatccgc attcatgatg      1740
     cacagctaca gaggtacatc ctggaaacat tgctaaagga agatgtgaaa ttgctttccc      1800
     atctgcttca ggctttagac tatggggcac ccccacatgg aggaattgcc ttagggttag      1860
     acagactggt gtgtcttgtc acgggagcac ccagcatcag agatgtcata gccttcccta      1920
     aatcctaccg aggacatgac cttatgagca atgctccaga cactgtgtct cctgaagatc      1980
     tgaagcctta ccatatccac gtctcatggc caacagactc agaagagaga gcatccgcca      2040
     caccttccaa atacttgagc tcttgacttg tcttctttgc tttactaaac ctaaaaagaa      2100
     gatccagact tgccacagac tttagaatca agtttctgtg tagaagcaat cattaccgag      2160
     taagaaacag aagctacaca attgtggtca tatgtaccat taggactttc tgtagttggg      2220
     agttctgtgg aagtttttta attggagaat tgtaaagtga aacaaaaaaa gctttttatt      2280
     ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a                          2321
//