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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC103887; SV 2; linear; mRNA; STD; HUM; 1254 BP.
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AC   BC103887;
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DT   15-SEP-2005 (Rel. 85, Created)
DT   23-JUL-2007 (Rel. 92, Last updated, Version 8)
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DE   Homo sapiens forkhead box D4-like 6, mRNA (cDNA clone MGC:119257
DE   IMAGE:40004959), complete cds.
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KW   MGC.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1254
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1254
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (07-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   H-InvDB; HIT000337439.
DR   ImaGenes; IOH63522.
DR   ImaGenes; IRAMp995D127Q.
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CC   On Oct 4, 2006 this sequence version replaced gi:74353496.
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Baylor Human Genome Sequencing Center
CC   cDNA Library Preparation: Baylor Human Genome Sequencing Center
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAM Plate: 7 Row: d Column: 12.
CC   Differences found between this sequence and the human reference
CC   genome (build 36) are described in misc_difference features below
CC   and these differences were also compared to chimpanzee genome
CC   (build 2).
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FH   Key             Location/Qualifiers
FH
FT   source          1..1254
FT                   /organism="Homo sapiens"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_MGC_283"
FT                   /clone="MGC:119257 IMAGE:40004959"
FT                   /tissue_type="PCR rescued clones"
FT                   /note="Vector: pCR-Blunt II-TOPO with reversed insert;
FT                   Clone identification sequence tag: TTTCATCT sequenced from
FT                   the forward primer"
FT                   /db_xref="taxon:9606"
FT   gene            1..1254
FT                   /gene="FOXD4L6"
FT   CDS             1..1254
FT                   /codon_start=1
FT                   /gene="FOXD4L6"
FT                   /product="forkhead box D4-like 6"
FT                   /db_xref="GOA:Q3SYB3"
FT                   /db_xref="HGNC:31986"
FT                   /db_xref="HSSP:2C6Y"
FT                   /db_xref="InterPro:IPR001766"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="InterPro:IPR018122"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3SYB3"
FT                   /protein_id="AAI03888.1"
FT                   /translation="MNLPRAERLRSTPQRSLRDSDGEDGKIDVLGEEEDEDEVEDEEEA
FT                   ASQQFLEQSLQPGLQVARWGGVALPREHIEGGGGPSDPSEFGTKFRAPPRSAAASEDAR
FT                   QPAKPPYSYIALITMAILQNPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLN
FT                   DCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLP
FT                   AAHAALHNPHPGPLLGAPAPPQPVPGAYPNTAPGRRPYALLHPHPLRYLLLSAPVYAGA
FT                   PKKAEGAALATPAPFPCCSPHLVLSLGRRARVWRRHREADASLSALRVLCKGSGERVQG
FT                   LRRVCPRPRGATATCSSDHQACCIPRPLPLCCKCPPPPLLGQFCSNSSSIRRRTAPTAA
FT                   LPPRARCWAGTCRPRRRC"
FT   misc_difference 1247
FT                   /gene="FOXD4L6"
FT                   /note="'G' in cDNA is 'C' in the human genome; amino acid
FT                   difference: 'R' in cDNA, 'P' in the human genome. The
FT                   chimpanzee genome agrees with the cDNA sequence, suggesting
FT                   that this difference is unlikely to be due to an artifact."
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SQ   Sequence 1254 BP; 228 A; 460 C; 372 G; 194 T; 0 other;
     atgaacctgc caagagctga gcgccttcgc tccacaccgc agcgcagcct ccgggactcc        60
     gatggggaag acggtaaaat cgatgtcctg ggagaggagg aagatgaaga cgaggtggaa       120
     gacgaggagg aggcggcgag ccagcagttc ctagagcagt cgctccagcc ggggctgcag       180
     gtggcccggt ggggcggggt tgcgcttccc cgagagcaca tcgagggcgg cggcggcccg       240
     agcgacccct cagagtttgg caccaagttc agggcaccgc caaggtctgc ggcggcctct       300
     gaagatgccc ggcagccggc aaagcccccc tactcgtaca tcgcgctcat caccatggcc       360
     atcctgcaaa acccgcacaa gcgcctcacg ctcagcggca tctgcgcctt cattagtggc       420
     cgcttcccct actaccgccg caagttcccc gcctggcaga acagcatccg ccacaacctc       480
     tcgctgaacg actgcttcgt taagatcccc cgcgagccgg gccacccagg caagggcaac       540
     tactggagcc tggaccccgc ctcccaagac atgttcgaca atggcagctt tctccggcgt       600
     aggaagcgtt tcaagcgcca ccaactgacc ccgggagccc acctgcccca ccccttccct       660
     ctacctgctg cacacgccgc cctgcacaac ccccacccag gccctctgct tggggcccct       720
     gccccgccgc agccagtccc gggggcctac cccaacaccg cccccgggag acgcccttac       780
     gctctgctgc acccgcatcc tcttcgctac ctactgctct cggcccccgt ctatgccggg       840
     gcaccgaaga aagcagaagg cgcggccctg gcgaccccgg cacccttccc gtgctgcagc       900
     cctcacttgg tcctcagcct tgggaggagg gcaagggtct ggcgtcgcca ccgggaggcg       960
     gatgcatctc tttcagcatt gagagtatta tgcaaggggt caggggagcg ggtacagggg      1020
     ctgcgcagag tttgtccccg accgcgtgga gctactgcca cctgctccag cgaccatcaa      1080
     gcctgttgca tccccagacc gctgcccctt tgctgcaagt gtccgccgcc gccgctgctc      1140
     ggacaatttt gcagcaatag cagcagcatc aggaggagga ctgcgccaac ggctgcgctc      1200
     ccaccaaggg cgcggtgctg ggcgggcacc tgtcggcctc gtcggcgctg ctga            1254
//
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