EBI Dbfetch

ID   BC102938; SV 1; linear; mRNA; STD; MAM; 1961 BP.
XX
AC   BC102938;
XX
DT   19-AUG-2005 (Rel. 84, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 9)
XX
DE   Bos taurus aminolevulinate, delta-, synthase 2, mRNA (cDNA clone MGC:128330
DE   IMAGE:7989379), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1961
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000013178; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000017538; Bos_taurus.
DR   ImaGenes; IMAGp998L1717134Q.
DR   ImaGenes; IRAKp961O19250Q.
DR   RFAM; RF00037; IRE.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, S. Lobo, L. Guan and S.
CC   Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 250 Row: o Column: 19.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1961
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-14"
FT                   /clone="MGC:128330 IMAGE:7989379"
FT                   /tissue_type="Fetal liver, 6 month male fetus, Hereford"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1961
FT                   /gene="ALAS2"
FT   CDS             54..1817
FT                   /codon_start=1
FT                   /gene="ALAS2"
FT                   /product="aminolevulinate, delta-, synthase 2"
FT                   /db_xref="GOA:Q3ZC31"
FT                   /db_xref="HSSP:2BWP"
FT                   /db_xref="InterPro:IPR001917"
FT                   /db_xref="InterPro:IPR004839"
FT                   /db_xref="InterPro:IPR010961"
FT                   /db_xref="InterPro:IPR015118"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="InterPro:IPR015424"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3ZC31"
FT                   /protein_id="AAI02939.1"
FT                   /translation="MVTAAMLLQRCPVLIRSPTGLLGKMIKTHQFLFGIGRCPILATQG
FT                   PSFSQIHLKATKAGGDSPSWAKSHCPFMLLELQDGKSKIVQKAAPEVQEDVKTFKTDLP
FT                   TSLASTSLKKTFSSPQEPEKNSEKVTHLIQNNMAGDHVFGYDQFFRDKIMEKKQDHTYR
FT                   VFKTVNRWADAYPFAEHFFEASVASKDVSVWCSNDYLGMSRHPRVLQATQEILQRHGAG
FT                   AGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSD
FT                   AGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKKSNPETPKIVAFETVHSMDGAICPL
FT                   EELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGY
FT                   IASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMR
FT                   QLLMDRGLPVIPCPSHIIPIRVGDAMLNTRICDLLLSKYGIYVQAINYPTVPRGEELLR
FT                   LAPSPHHSPQMMEDFVEKLLEAWTEVGLPLQDISIAACNFCRRPVHFELMSEWERSYFG
FT                   NMGPQYVTTYA"
XX
SQ   Sequence 1961 BP; 465 A; 534 C; 498 G; 464 T; 0 other;
     gaacctgtcg ttcgttcgtc ctcagtgcag ggcaacagaa cttcaggctc aagatggtga        60
     cagcagccat gttgctacag cgttgcccag tgcttatccg gagccccaca ggcctcctgg       120
     gcaagatgat taagactcac cagttcctgt ttggtattgg acgttgtccc attctggcca       180
     cccaaggacc aagtttttct caaatccacc ttaaggcaac caaggctgga ggggattctc       240
     catcttgggc caagagccac tgtcccttca tgctgttgga actccaggat gggaagagta       300
     aaattgtgca aaaagcagcc ccagaagtcc aggaagatgt gaagactttc aagacagact       360
     tgcccacctc tctggcctca accagcctga agaagacatt ctccagtccc caagagccag       420
     agaaaaattc ggagaaggtc acacacctga ttcagaacaa catggctgga gaccatgtct       480
     ttggttatga ccagtttttt agggacaaaa tcatggagaa gaaacaggac cacacctatc       540
     gtgttttcaa gactgtgaat cgctgggctg atgcataccc ctttgctgaa cacttctttg       600
     aggcatctgt ggcctcaaag gatgtgtctg tctggtgcag taatgactac ctgggcatga       660
     gccggcaccc tcgggtcttg caagccacac aagagatcct gcagcgccat ggagctggag       720
     ctggtggcac ccgcaacatc tcgggtacca gtaagttcca tgtcgagctg gagcaagagc       780
     tggctgagct gcaccagaag gactcagccc tgctcttctc ttcctgcttt gtggccaatg       840
     actccactct cttcaccttg gccaagatct tgccagggtg tgagatttac tcagatgcag       900
     gcaaccatgc ttccatgatc caaggtatcc gcaacagtgg agcagctaag tttgtcttca       960
     ggcacaatga tcctgaccac ctgaagaaac ttctaaagaa gtccaaccct gagacaccca      1020
     aaatcgtggc cttcgagact gttcactcca tggacggtgc catctgtccc cttgaggaat      1080
     tgtgtgatgt ggcccatcag tatggggctc tgaccttcgt ggatgaagtt catgctgtag      1140
     gactgtatgg gtcccggggt gctgggattg gggagcgtga tggaattatg cacaagattg      1200
     acatcatctc tggaactctt ggcaaagcct ttggctgtgt gggtggctac attgccagca      1260
     cccgtgactt ggtggacatg gtacgttcct atgctgctgg cttcatcttc accacttcac      1320
     tgcctcccat ggtgctctct ggggctctgg aatccgtgcg actgctcaaa ggagaggagg      1380
     gccaagccct gaggagggcc caccaacgca atgtcaagca catgcgtcag ctactaatgg      1440
     acaggggcct tcctgtcatt ccatgcccca gccacatcat ccccattcgg gtgggtgatg      1500
     caatgctgaa caccaggatc tgtgatctcc tgctctccaa gtatggcatc tatgtgcagg      1560
     ccatcaacta cccaactgtc ccccggggtg aggagctgct gcgcttggca ccctcccccc      1620
     accacagccc tcagatgatg gaagactttg tggagaagct gctagaagcc tggactgagg      1680
     tgggactccc cctccaggat atatctatag ctgcctgcaa tttctgccgc cgtcctgtac      1740
     acttcgagct catgagtgag tgggaacgtt cctactttgg gaacatgggg ccccagtatg      1800
     tcaccactta tgcctaagaa accagctgct ttggatcccc actccacctg cacttcactt      1860
     gaagctgggc cgcctcctgt cctctgcttt gtgtgccttt agctgacttg agactgaaaa      1920
     taaagagcaa agtgtagcat ttgttaaaaa aaaaaaaaaa a                          1961
//