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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC102822; SV 1; linear; mRNA; STD; MAM; 1278 BP.
XX
AC   BC102822;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 6)
XX
DE   Bos taurus prostaglandin reductase 1, mRNA (cDNA clone MGC:127457
DE   IMAGE:7951078), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1278
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000011027; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000014649; Bos_taurus.
DR   ImaGenes; IMAGp998D2016560Q.
DR   ImaGenes; IRAKp961K24241Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
CC   University of Alberta
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 241 Row: k Column: 24.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1278
FT                   /organism="Bos taurus"
FT                   /lab_host="XL10-Gold"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-02"
FT                   /clone="MGC:127457 IMAGE:7951078"
FT                   /tissue_type="Ileum, crossbred X Angus female calf, 6
FT                   months old."
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1278
FT                   /gene="PTGR1"
FT                   /note="synonym: LTB4DH"
FT   CDS             41..1030
FT                   /codon_start=1
FT                   /gene="PTGR1"
FT                   /product="prostaglandin reductase 1"
FT                   /db_xref="GOA:Q3SZJ4"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3SZJ4"
FT                   /protein_id="AAI02823.1"
FT                   /translation="MVHAKSWTLKKHFVGYPTNSDFELKTVELPPLKDGEVLLEALYLT
FT                   VDPYMRIMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEK
FT                   VLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAK
FT                   LKGCKVVGTAGSDEKVAWLKKHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEF
FT                   SNVAITQMKKFGRIAICGAISVYNRTSPLSPGPSPEIIIFKELHLQGFVVYRWQGEVRQ
FT                   KALRDLLKWVSEGKIQYHEHVTEGFENMPAAFIGLLKGENLGKAIVKA"
XX
SQ   Sequence 1278 BP; 394 A; 234 C; 318 G; 332 T; 0 other;
     tgggcttcgg gaagtggatc ctgcagactc gagcttcagg atggttcatg caaagagctg        60
     gaccctgaag aaacattttg taggttaccc tactaacagt gactttgaac tgaagacagt       120
     tgaactccca cccttaaaag atggagaggt cctgctggaa gctttgtact tgactgtgga       180
     tccttacatg agaattatgg caaaaagctt gaaggagggt gacatgatga tgggagagca       240
     agtggccaga gttgtggaaa gtaaaaattc agccttccca acaggaacta ttgtgctggc       300
     tccttctggc tggacaacgc attccatttc taatggggaa aaactggaaa aggtgcttgc       360
     agagtggcca gacacgttac cactgtctct ggctctggga acggttggca tgcccggcct       420
     aacagcctac tttggcctgt tggacatctg tggagtgaag ggtggagaaa cagtgctggt       480
     tagtgcggca gcaggagcag tgggctctat tgtggggcag atcgctaagc tcaagggctg       540
     caaagttgtt ggaacagcag ggtctgatga aaaagttgct tggcttaaaa agcatggatt       600
     tgatgttgcc cttaactaca aaacagtgaa gtctttggaa gaagctctga aagaagctgc       660
     tcccgagggt tatgattgtt attttgataa tgtgggtgga gagttttcca atgttgctat       720
     cacccagatg aagaaatttg gaagaattgc tatatgtggg gccatctctg tatacaacag       780
     aaccagccca ctttccccag gcccatcccc ggaaatcatc atctttaagg aactccactt       840
     gcaaggcttc gtcgtctacc gctggcaagg agaagtccgc cagaaggctc tgagagactt       900
     gctgaagtgg gtctcagagg gtaaaatcca gtaccatgaa catgtcactg aaggatttga       960
     aaacatgcca gctgcattta taggattgct aaaaggagag aatctgggaa aggcaatagt      1020
     gaaagcatga acaaaaatga cacatggaat ccagaaatca cctagatgat tagtttcttt      1080
     taatcattta gtaaaatata tactaacttc ataatgcatg aacaaaagtc actagtggaa      1140
     tctagaaatc atttggatga ttagcttctt tttaatcatt tagtaaaatc tgtgctgttt      1200
     tcataatcta aaaaacagta attgtaatgt gattgatcta cctaataaaa tacattgaag      1260
     tgaaaaaaaa aaaaaaaa                                                    1278
//
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