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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC102545; SV 1; linear; mRNA; STD; MAM; 1586 BP.
XX
AC   BC102545;
XX
DT   13-SEP-2005 (Rel. 85, Created)
DT   27-JUN-2007 (Rel. 92, Last updated, Version 8)
XX
DE   Bos taurus saccharopine dehydrogenase (putative), mRNA (cDNA clone
DE   MGC:127815 IMAGE:30957901), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1586
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000003804; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000004949; Bos_taurus.
DR   ImaGenes; IMAGp998M1416775Q.
DR   ImaGenes; IRAKp961K07242Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Y. Meng, M. Taniguchi, L. Guan and S. Moore
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 242 Row: k Column: 7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1586
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-04"
FT                   /clone="MGC:127815 IMAGE:30957901"
FT                   /tissue_type="Liver, 6 month old female calf, Crossbred x
FT                   Angus"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1586
FT                   /gene="SCCPDH"
FT   CDS             119..1408
FT                   /codon_start=1
FT                   /gene="SCCPDH"
FT                   /product="saccharopine dehydrogenase (putative)"
FT                   /db_xref="GOA:Q3T067"
FT                   /db_xref="InterPro:IPR005097"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3T067"
FT                   /protein_id="AAI02546.1"
FT                   /translation="MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERTSHLPWAVA
FT                   GRSREKLLRVLERAAMKLGRPTLSSEVGIIICDITNPASLDEMAKQATVVLNCVGPYRF
FT                   YGEPVIKACIENGTSCIDISGEPQFLELMYWKYHEKAAEKGVYIIGSSGFDSIPADLGV
FT                   IYTRNKMNGTLTAVESFLTISSGPEGLCVHDGTWKSAVYGFGDKSNLKKLRNESDMKPV
FT                   PIVGPKLKRRWPISYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYINVG
FT                   GITSVIKLMFAGLFFLFFVRFGIGRQLLIKFTWLFSFGYFSKQGPTQKQIDASSFTMTF
FT                   FGQGFSQGVSPVKNKPNIRICTQVKGPEAGYVSTSIAMVQAAMILLNDASDLPKAGGVF
FT                   TPGAAFSRTKLIDRLNEHGIEFSVISSTEV"
XX
SQ   Sequence 1586 BP; 434 A; 322 C; 393 G; 437 T; 0 other;
     tggagaccgc agcggccgcg gcggagtcgg ttgctgcgcc cggtactgtg gtagcagctt        60
     gaggcgcagg cgccgtgggc tcagcccgcc ccgggtcttg catcgctgtg ggttcgtcat       120
     ggcgacccag cagaggcctt ttcacctggt ggtgttcggc gcctctggct ttaccggcca       180
     gttcgtgacc gaggaggtgg cgcgggagca ggtgtccccg gagcggactt cccatctgcc       240
     ctgggccgtg gcgggccgtt cccgggagaa gctgctgcga gtgctggaga gggctgccat       300
     gaagctggga agaccgacac tgtcatctga agttggaata ataatttgtg atatcactaa       360
     tccagcctca cttgatgaaa tggctaaaca ggcaacagtt gtcctcaact gtgtaggccc       420
     ataccgattt tatggagaac ctgtaataaa agcatgtatt gaaaatggaa ctagctgtat       480
     tgacatctct ggagaacctc agtttctgga actaatgtat tggaagtatc atgagaaagc       540
     tgcagaaaag ggggtttata tcattggaag cagtggcttt gactccattc cagcagatct       600
     gggagtaata tataccagaa ataaaatgaa tggtacactg actgctgtgg aaagtttcct       660
     gaccatatct tcaggacctg aggggttgtg tgttcatgat ggtacctgga agtcagcagt       720
     ttatggtttt ggagataaga gtaatttgaa aaagctacga aatgagtcag atatgaagcc       780
     tgtcccaatt gttggaccaa aattgaaaag aaggtggcca atttcttact gcagagaact       840
     caacagttat tccattcctt tcttgggagc agatgtgtct gttgtgaagc ggactcagcg       900
     ttacttgcat gaaaatttag agcagtcacc tgttcagtat gctgcttata taaatgtggg       960
     aggcatcact tctgttatta agctgatgtt tgctggactc ttctttttat tctttgtgag      1020
     gtttggcatc ggaaggcaac ttctcataaa attcacatgg ctcttctcct ttggttattt      1080
     ttcaaaacaa ggtccaacac aaaaacagat tgacgcttcc tcatttacga tgacattttt      1140
     tggtcaaggg ttcagccaag gcgtctcccc tgttaagaac aaaccaaaca tcagaatttg      1200
     tactcaggtg aaaggaccag aagctggcta tgtatctacc tccatagcca tggtccaggc      1260
     agccatgatt cttttaaatg atgcctctga tcttcctaag gcgggtggag tcttcacgcc      1320
     cggagcagct ttctccagaa caaagttgat tgacagactc aatgaacatg gcattgaatt      1380
     tagtgtcatt agcagcactg aagtctaaac atttgaataa ttaattgaag tcataaaatg      1440
     tatgaattaa cagcttttta atttggtgtg ttgaaatgct tctataaacc tatctgacta      1500
     tatgtggaaa agattgtcaa atctaaaata tgtatacatt aaaagcagga aattgtacta      1560
     gcttaccccg aaaaaaaaaa aaaaaa                                           1586
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