EBI Dbfetch

ID   BC102425; SV 1; linear; mRNA; STD; MAM; 1538 BP.
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AC   BC102425;
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DT   19-AUG-2005 (Rel. 84, Created)
DT   05-AUG-2008 (Rel. 96, Last updated, Version 11)
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DE   Bos taurus similar to Putative ubiquitin-conjugating enzyme E2 D3-like
DE   protein, mRNA (cDNA clone MGC:127427 IMAGE:7951501), complete cds.
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KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RC   NIH-MGC Project
RP   1-1538
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000038253; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000052998; Bos_taurus.
DR   ImaGenes; IMAGp998F1116561Q.
DR   ImaGenes; IRAKp961L07241Q.
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CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
CC   University of Alberta
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 241 Row: l Column: 7.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1538
FT                   /organism="Bos taurus"
FT                   /lab_host="XL10-Gold"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-02"
FT                   /clone="MGC:127427 IMAGE:7951501"
FT                   /tissue_type="Ileum, crossbred X Angus female calf, 6
FT                   months old."
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1538
FT                   /gene="UBE2D3P"
FT                   /note="synonym: UBE2D3"
FT   CDS             258..701
FT                   /codon_start=1
FT                   /gene="UBE2D3P"
FT                   /product="similar to Putative ubiquitin-conjugating enzyme
FT                   E2 D3-like protein"
FT                   /db_xref="GOA:Q3ZCF7"
FT                   /db_xref="InterPro:IPR000608"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3ZCF7"
FT                   /protein_id="AAI02426.1"
FT                   /translation="MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPY
FT                   QGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLL
FT                   SICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM"
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SQ   Sequence 1538 BP; 457 A; 314 C; 319 G; 448 T; 0 other;
     gagttccgtc agagcggaca tcttgtggct gtgtcgtgcg cgtgagcccc gtagggccgg        60
     ggaggcacca gctgccgcgc ggggaggagg ccgaggccgc agcgtgaggg aggccccggc       120
     ccctctgcgc ctgtgtctgg cagagccggt gtgagacgaa gagacaatcc ttcccagccg       180
     ccaggataat caagagtttt ggccggacct tcgagcacac accgagatag tgaggagcca       240
     gacgaaaagc acagactatg gcgctgaaac ggattaataa ggaacttagt gatttggccc       300
     gtgaccctcc agcacaatgt tctgcaggtc cagttgggga tgatatgttt cattggcaag       360
     ccacaattat gggacctaat gacagcccat atcaaggcgg tgtattcttt ttgacaattc       420
     attttcctac agactacccc ttcaaaccac ctaaggttgc atttacaaca agaatttatc       480
     atccaaatat taacagtaat gacagcattt gtctcgatat tctaagatca cagtggtctc       540
     ctgctttaac tatttctaaa gttcttttat ccatttgttc actgctatgt gatccaaacc       600
     cagatgaccc cctagtgcca gagattgcac ggatctataa aacagacaga gataagtaca       660
     acagaatatc tcgggaatgg actcagaagt atgccatgtg atgctacctt aaagtcagaa       720
     taacctgcat tatagctgga ataaacttta aattactgtt ccttttttga ttttcttatc       780
     cggctgctcc cctatcagac ctcatctttt ttaattttat tttttgttta cctccctcca       840
     ttcattcaca tgctcatctg agaagactta agttcttcca gctttggaca ataactgctt       900
     ttagaaactg taaagtagtt acaagagaac agttgcccaa gattcagaat ttttaaaaaa       960
     aaatggagca tgtgtattat gtggccaatg tcttcactct aacttggtta tgagactaaa      1020
     accattcctc actgctctaa catgctgaag aatcatctga gagggaggga gatggatgct      1080
     gagttgtcac atcaaaggaa gcagcattat tctagcagca tccattcttg tttaagcctt      1140
     ccactgttag agatttgagg ttacatgata tactttatgc tcataactga tatggctgga      1200
     gaattggtat tgaatttata gcatcagcag aacagaaaat gtgatgtatt ttatgcatgt      1260
     caataaagga atgacctgtt cttgttctac agagaatgga aattggaagt caaacaccct      1320
     ttgtattcca aaatagggtc tcaaaacatt ttgtaatttt catttaaatt gttaggaggc      1380
     ttggagctat tagttaatct atcttccaat acactgttta atatagcact gaataaataa      1440
     tgcaagttgt caatggatga gtgatcaact aatagctctg ctagtaattg atttattttt      1500
     cttcaataaa gttgcataaa ccaaaaaaaa aaaaaaaa                              1538
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