spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC102341; SV 1; linear; mRNA; STD; MAM; 1010 BP.
XX
AC   BC102341;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 7)
XX
DE   Bos taurus vacuolar protein sorting 29 homolog (S. cerevisiae), mRNA (cDNA
DE   clone MGC:127483 IMAGE:7951781), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1010
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000008417; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000011076; Bos_taurus.
DR   ImaGenes; IMAGp998B0316562Q.
DR   ImaGenes; IRAKp961M21241Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
CC   University of Alberta
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 241 Row: m Column: 21.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1010
FT                   /organism="Bos taurus"
FT                   /lab_host="XL10-Gold"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-02"
FT                   /clone="MGC:127483 IMAGE:7951781"
FT                   /tissue_type="Ileum, crossbred X Angus female calf, 6
FT                   months old."
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1010
FT                   /gene="VPS29"
FT   CDS             47..607
FT                   /codon_start=1
FT                   /gene="VPS29"
FT                   /product="vacuolar protein sorting 29 homolog (S.
FT                   cerevisiae)"
FT                   /db_xref="GOA:Q3T0M0"
FT                   /db_xref="InterPro:IPR000979"
FT                   /db_xref="InterPro:IPR004843"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3T0M0"
FT                   /protein_id="AAI02342.1"
FT                   /translation="MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLC
FT                   TKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLA
FT                   LLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQAST
FT                   VVTYVYQLIGDDVKVERIEYKKS"
XX
SQ   Sequence 1010 BP; 310 A; 176 C; 204 G; 320 T; 0 other;
     tcaaggcggc ggcgattgtg gtgactgagc ggagcccagt gacaggatgg ctgggcacag        60
     attggtgttg gtattaggag acctgcacat cccacatcgg tgcaacagtt tgccagctaa       120
     gttcaaaaag ctgctggtgc cagggaagat tcagcacatt ctctgcactg gaaacctttg       180
     caccaaagag agttatgact atctcaagac tctggctggc gatgtccata ttgtgagagg       240
     agacttcgat gagaatctga attatccaga gcagaaagtt gtgactgttg ggcagttcaa       300
     aattggtttg atccatggac atcaagttat tccatgggga gatatggcca gcctagccct       360
     attgcagagg cagtttgatg tggacattct tatttcagga catacacata aatttgaagc       420
     atttgagcat gaaaataaat tctacattaa tccaggttct gccactggag catataatgc       480
     cttggaaaca aacattattc cttcatttgt gttgatggat atccaggctt ctacagttgt       540
     cacttatgtg tatcagctaa ttggagatga tgtgaaagta gaacgaattg aatacaaaaa       600
     atcttaaagc caggcctgtc ctgttgattt ttctgctggg cttttttttt ttttttccat       660
     tcccctgttc aactcaagta attaaacatt taagagccac aaaattgtat cacttttata       720
     atattttgca gtaaaatata tcatcttctg ttaatacagt gttggagctt cttgtaaact       780
     gtaagattat atttagttta agtgtatgat ttctatgaaa aaatgtttac cacacagtaa       840
     atggtcacac gttaagaaaa atttatcctt gtaaatatct tcatagttga tatttggaac       900
     tttattacca aagtagtgca tgaagaggaa gaacctagac tttcttgtat acatttttct       960
     cttctccagt aataaacagt tacctttcat ttacaaaaaa aaaaaaaaaa                 1010
//
spacer
spacer