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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC102314; SV 1; linear; mRNA; STD; MAM; 1443 BP.
XX
AC   BC102314;
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DT   13-SEP-2005 (Rel. 85, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 7)
XX
DE   Bos taurus thioredoxin domain containing 12 (endoplasmic reticulum), mRNA
DE   (cDNA clone MGC:127462 IMAGE:7949283), complete cds.
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KW   MGC.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RC   NIH-MGC Project
RP   1-1443
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
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DR   Ensembl-Gn; ENSBTAG00000011024; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000014645; Bos_taurus.
DR   ImaGenes; IMAGp998J0116555Q.
DR   ImaGenes; IRAKp961G21241Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
CC   University of Alberta
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 241 Row: g Column: 21.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1443
FT                   /organism="Bos taurus"
FT                   /lab_host="XL10-Gold"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-02"
FT                   /clone="MGC:127462 IMAGE:7949283"
FT                   /tissue_type="Ileum, crossbred X Angus female calf, 6
FT                   months old."
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1443
FT                   /gene="TXNDC12"
FT                   /note="synonyms: ERP18, TLP19"
FT   CDS             137..655
FT                   /codon_start=1
FT                   /gene="TXNDC12"
FT                   /product="thioredoxin domain containing 12 (endoplasmic
FT                   reticulum)"
FT                   /db_xref="GOA:Q5E936"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5E936"
FT                   /protein_id="AAI02315.1"
FT                   /translation="MELRPRLGATCLLGFSFLLLVTSSHGPNGLGKGFGDHIHWRTLED
FT                   GKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDED
FT                   FSPDGGYIPRILFLDPSGKVRPEIINENGNPSYKYFYISAEQVVQGMKEAQERLTGDAF
FT                   REKHLEDEL"
XX
SQ   Sequence 1443 BP; 404 A; 327 C; 322 G; 390 T; 0 other;
     aaaaaaaaaa aaaaaaaaaa aatctgggaa cgcgaacggc tgagctgatc cgcacttggg        60
     aaaccgcacg aaccttctcc taggacttcg tcggccctac gtctgctcag cccagtggct       120
     ccgcgcacct gccaccatgg agctgcggcc tcgtctcggg gccacctgtt tgctgggctt       180
     cagtttcctg ctccttgtca cctcttctca tggacctaat gggcttggaa agggttttgg       240
     agatcacatt cattggagga cgctagaaga tgggaagaag gaagcagctg ccagtggatt       300
     gcccctgatg gtgattatcc ataagtcctg gtgtggagct tgcaaagctt taaagcccaa       360
     atttgcagaa tctacagaaa tttcagaact ttcccataat tttgttatgg taaatcttga       420
     ggatgaagag gagcccaaag atgaagattt cagccccgat gggggttata ttccacgaat       480
     cctgttcctg gatcccagtg gcaaagtgcg tcctgaaatc atcaatgaga atggaaaccc       540
     cagctacaag tatttctaca tcagtgctga gcaagttgtt caggggatga aggaagctca       600
     ggaaaggctg acgggtgatg ccttcagaga gaaacatctg gaagatgagt tgtaacatga       660
     atgcacccct tctttcctca aagttattgt tctggaagaa agcagcaggg aagggaatac       720
     tgaggaatca gaacaattga atggatcgga aaaccttgct ccttcccaca tgggaagggc       780
     ccctctcact gttagaagag ttctgctgcc agaaactggt ctccatgttt gtgatccagc       840
     agagtgtggc agacttcctg gtcctgtccc ctctcaccta aatatctctt tgtcattgaa       900
     ggtaaagaat gacacctttt gacataaaac ttgagccatt tggagattta ctcctcacac       960
     tgcagtattt gaatctttcc atttcctcct gcttaactca ccttggtggt gaaaagagac      1020
     cagaagcatc ttttctataa tgttaaaaat tgcggaaaga acttatcatt taagacaaaa      1080
     attctaaatg taaagccgta attctgcccc accaaggagc tcagcctgtc tcttcttttt      1140
     ctcctgggaa taatcttggg cttcttcctg aatgcctgca acttccttcc tcttctctgg      1200
     cttggcttcc ctgtctgcgc gcatgtgtgt gcaggaatgg ctgtgtgctc tggactggcc      1260
     ccagctggaa gcatgctttc tttgcccccg ttaactgttg aagaaacctt ctagccctag      1320
     atggagccat ttttgtcaag tcgtcaactg tatttttgta ctgggattaa caacaaaaaa      1380
     agaaaaaata ttaattgttc cattaaactt taataaaact ttaaaagaaa aaaaaaaaaa      1440
     aaa                                                                    1443
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