EBI Dbfetch

ID   BC102309; SV 1; linear; mRNA; STD; MAM; 1296 BP.
XX
AC   BC102309;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   24-JAN-2007 (Rel. 90, Last updated, Version 6)
XX
DE   Bos taurus caspase 6, apoptosis-related cysteine peptidase, mRNA (cDNA
DE   clone MGC:127633 IMAGE:7949345), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1296
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000012537; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000016642; Bos_taurus.
DR   ImaGenes; IMAGp998L1516555Q.
DR   ImaGenes; IRAKp961G01241Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
CC   University of Alberta
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Taniguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Bala M, Barber S, Babakaiff R, Beland J, Chand S, Chun E,
CC   Del Rio L, Gibson S, Kirkpatrick R, Liu J, Matsuo C, Mayo M,
CC   Palmquist D, Santos RR, Stott J, Tsai M, Wong D, Wynhoven B, Hanson
CC   R, Siddiqui A, Holt R, Jones SJ, Marra MA
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 241 Row: g Column: 1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1296
FT                   /organism="Bos taurus"
FT                   /lab_host="XL10-Gold"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-02"
FT                   /clone="MGC:127633 IMAGE:7949345"
FT                   /tissue_type="Ileum, crossbred X Angus female calf, 6
FT                   months old."
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1296
FT                   /gene="CASP6"
FT   CDS             3..884
FT                   /codon_start=1
FT                   /gene="CASP6"
FT                   /product="caspase 6, apoptosis-related cysteine peptidase"
FT                   /db_xref="GOA:Q3T0P5"
FT                   /db_xref="HSSP:1SHL"
FT                   /db_xref="InterPro:IPR001309"
FT                   /db_xref="InterPro:IPR002138"
FT                   /db_xref="InterPro:IPR002398"
FT                   /db_xref="InterPro:IPR011600"
FT                   /db_xref="InterPro:IPR015469"
FT                   /db_xref="InterPro:IPR015917"
FT                   /db_xref="InterPro:IPR016129"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3T0P5"
FT                   /protein_id="AAI02310.1"
FT                   /translation="MSSEPPPRRARGPGEEQNMTEIDAFPRREIFDPTEKYKMDHKRRG
FT                   IALIFNHERFFWHLTLPNRPGTSADRDNLRRRFSDLGFEVKCFDDLRAEELLLKIHEAS
FT                   TASHVDADCFLCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCQSLVGKPKIFIIQAC
FT                   RGSQHDVPVIPLDVVDHRTDTPDANLTQVDAASVYTLPAGADFLMCYSVAEGYYSHRET
FT                   VNGSWYIQDLCEMLGKFGSSLEFTELLTLVNRKVSQRRVDFCRDPNAIGKKQVPCFASM
FT                   LTKKLHFSPKSK"
XX
SQ   Sequence 1296 BP; 393 A; 243 C; 281 G; 379 T; 0 other;
     ggatgagctc ggagcctccg cctcgccggg ctcgcggtcc aggtgaagaa caaaacatga        60
     ccgaaataga tgccttccct aggagagaaa tatttgatcc aactgaaaag tacaaaatgg       120
     accacaagag gagaggaatt gcattaatct tcaatcatga gaggttcttc tggcacttaa       180
     ccctgccgaa caggcctggc accagtgctg acagagacaa tctgaggcgc aggttttcag       240
     atctaggatt tgaagtaaaa tgttttgatg atcttagagc agaagaacta ttgctcaaaa       300
     ttcatgaggc atcaactgct agccacgtag atgcagattg ctttttgtgt gttttcctga       360
     gtcatggtga aggcaaccac atctatgcat atgatgccaa aattgaaatt cagacgttaa       420
     caggcttgtt caaaggagac aagtgtcaga gcctggttgg aaaacccaag atatttatca       480
     ttcaggcgtg tcggggcagc cagcatgacg tgccggtcat ccctctggat gtagtcgatc       540
     acaggacaga cacgccagat gccaacctaa cccaggtgga cgcggcctcg gtttatacac       600
     ttcctgctgg agccgacttc ctcatgtgct actctgtggc agaaggttat tattctcatc       660
     gggaaactgt gaatggttca tggtatattc aagatttgtg tgagatgctg gggaaattcg       720
     gctcctcttt ggagttcaca gagctcctca ccctggtgaa caggaaggtt tctcagcgcc       780
     gagttgactt ctgcagagac ccaaatgcga ttggaaagaa gcaggttccc tgctttgcct       840
     caatgctaac taaaaagctg cacttctctc caaaatctaa atgataggtg ctattttgtt       900
     ttatgtattc aaaataagat tctctctttt catataaagg agtatcactt ggttgaagca       960
     atttaaatgg tgtagcaatt ttaaatgttt taagctgtaa taacttaaaa tagttcatat      1020
     tggacatggt gaaggggttt tgatatatgg agaaatgaaa tcctcaggga attcctatag      1080
     agaaaaatcc acaagcattt gtaatactag acttttgtag taaattgcaa gtttactcaa      1140
     tctctggctg atttaacttg tattttgcga cttttttata aaacttcata atgtttttaa      1200
     gggcttttga aatctaagaa tttgttttcc tttaatattt gaaatttttt aattaaaatt      1260
     ttctaatttc caaaaaaaag aaaaaaaaaa aaaaaa                                1296
//