EBI Dbfetch

ID   BC102242; SV 1; linear; mRNA; STD; MAM; 1607 BP.
XX
AC   BC102242;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 6)
XX
DE   Bos taurus 2-deoxyribose-5-phosphate aldolase homolog (C. elegans), mRNA
DE   (cDNA clone MGC:126989 IMAGE:7898279), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1607
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (15-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000022167; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000007367; Bos_taurus.
DR   ImaGenes; IMAGp998L2116269Q.
DR   ImaGenes; IRAKp961D20240Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
CC   University of Alberta
CC   cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo,  L. Guan
CC   and Dr. S. Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 240 Row: d Column: 20.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1607
FT                   /organism="Bos taurus"
FT                   /lab_host="XL10-Gold"
FT                   /strain="Crossbred x Angus"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-02"
FT                   /clone="MGC:126989 IMAGE:7898279"
FT                   /tissue_type="Ileum, crossbred X Angus female calf, 6
FT                   months old."
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..1607
FT                   /gene="DERA"
FT   CDS             45..1001
FT                   /codon_start=1
FT                   /gene="DERA"
FT                   /product="2-deoxyribose-5-phosphate aldolase homolog (C.
FT                   elegans)"
FT                   /db_xref="GOA:Q3T0V9"
FT                   /db_xref="InterPro:IPR002915"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3T0V9"
FT                   /protein_id="AAI02243.1"
FT                   /translation="MSAHQQGTELDLSWISKIQVNKPAVLRRAEQIQARRPVKKEWQAA
FT                   WLLKAVTCIDLTTLSGDDTASNIQRLCYKAKYPIREDLLKALNMHDKGITTAAVCVYPA
FT                   RVCDAVRALKAAGCDIPVASVATGFPAAQTHLKTRLEEIRLAVEDGATEIDVVINRTLV
FT                   LTGQWKALYDEIRQFRKACGEAHLKTILATGELGSLTNVYKASMIAMMAGSDFIKTSTG
FT                   KETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRSAKDSLVWLSLIKEELGDEWM
FT                   KPELFRIGASTLLADIERQIYHHVTGRYAAYHDLPMS"
XX
SQ   Sequence 1607 BP; 506 A; 336 C; 340 G; 425 T; 0 other;
     gagaggccgg ttcccggagc cagctgagtt gcggcctcta cgacatgtcg gcgcaccagc        60
     agggcacgga gctcgacctt agctggatct ccaaaataca agtgaataaa ccagcagtgc       120
     taagacgtgc agaacaaatc caggctcgta gacctgtgaa aaaggagtgg caggctgcat       180
     ggctcctgaa ggctgttacc tgtatagatc ttactacact ttcaggtgat gacacagctt       240
     ccaacattca aaggctgtgt tataaagcca agtatccaat ccgggaagac ctcttaaaag       300
     ctttaaatat gcatgataaa ggcatcacta cagctgccgt ttgtgtttat cctgcccgtg       360
     tgtgtgatgc agtgagagct ctaaaggctg caggctgtga catcccagtg gcatcagtgg       420
     ccactggctt tccagctgca cagactcatt tgaaaacacg attagaagag ataagattgg       480
     ccgtggaaga tggagctacg gaaatcgatg tggtgattaa caggaccttg gtgctgacag       540
     gccagtggaa agccctgtat gatgagattc gtcagtttcg caaggcctgt ggggaggctc       600
     atctcaaaac catcttagcc acaggagaac ttggatctct caccaacgtc tataaagcca       660
     gtatgatagc catgatggca ggatcagatt ttattaagac ctctacggga aaagaaacag       720
     taaatgctac ctttccagta gctatagtta tgcttcgggc cattagagat ttcttctgga       780
     aaactggaaa caaggtaggc tttaaaccgg ccggaggcat ccgcagtgcg aaggactccc       840
     ttgtgtggct ctctctcata aaggaggagc tgggagacga gtggatgaag cctgaactct       900
     ttcgaatagg tgccagcact ctacttgccg acattgagag gcagatttac catcacgtga       960
     ctggaagata cgcagcctac catgacctcc ccatgtctta gatcatcaac aaattccaaa      1020
     aatgtccttt gccacaatgt gtaaaaatta tctatgtgat tgctaaaatt atttaatgaa      1080
     aaaatggggg gatagataac ttcccccctg cccttaaaat ttccattgaa tttcgcttaa      1140
     agaatgaatg gaaaaaaaaa caactaatct acacatggtc cccatttcag gcatatctga      1200
     aatgatctga attactatat ctccagggtt aattttgcaa aggttttctc ttaaagaact      1260
     ctgagtaaaa tgttaatgat agctttgata atgttaaatt ctaagggagc aaatattgac      1320
     ttgcccaaga accactatgt ggcaaaagaa aatgaagcac cccgaacttc ccttgctctt      1380
     ccaaactact tcaggactaa tttcctaatc actcagcacg aatttcctgc catgataatt      1440
     tgtctttaat tttcacaaca gaaatgctct tttactaatt gttttgctaa tgaaatatct      1500
     gtcattttat atgaaactat ggatatcatt gaatattttt aatgaaaaca ttcctatcgt      1560
     ttattaaaaa aactttaaat tgaaaaaaaa gaaaaaaaaa aaaaaaa                    1607
//