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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC100614; SV 1; linear; mRNA; STD; ROD; 2013 BP.
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AC   BC100614;
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DT   18-AUG-2005 (Rel. 84, Created)
DT   19-MAR-2009 (Rel. 100, Last updated, Version 6)
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DE   Rattus norvegicus asparagine-linked glycosylation 8,
DE   alpha-1,3-glucosyltransferase homolog (S. cerevisiae), mRNA (cDNA clone
DE   MGC:124750 IMAGE:5598102), complete cds.
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KW   MGC.
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OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-2013
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2013
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000019086.
DR   Ensembl-Gn; ENSRNOG00000012292; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000016478; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000055359; Rattus_norvegicus.
DR   ImaGenes; IMAGp998L0712384Q.
DR   ImaGenes; IRAKp961A03243Q.
DR   ImaGenes; IRBPp993H1047D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Jeff Green/Paturu Kondaiah, NCI.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 243 Row: a Column: 3
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 77628005.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2013
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Pr49"
FT                   /clone="MGC:124750 IMAGE:5598102"
FT                   /tissue_type="Prostate, pool of NCI_CGAP_Pr30, 40, 41 and
FT                   NCI_CGAP_Pr29, 39, 42"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:10116"
FT   gene            1..2013
FT                   /gene="Alg8"
FT   CDS             13..1593
FT                   /codon_start=1
FT                   /gene="Alg8"
FT                   /product="asparagine-linked glycosylation 8,
FT                   alpha-1,3-glucosyltransferase homolog (S. cerevisiae)"
FT                   /db_xref="GOA:Q497D1"
FT                   /db_xref="InterPro:IPR004856"
FT                   /db_xref="UniProtKB/TrEMBL:Q497D1"
FT                   /protein_id="AAI00615.1"
FT                   /translation="MAAFGLAAGSGHWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLA
FT                   ITHNLPISQWYYEATSEWTLDYPPFFAWFEYALSHIAKYFDQEMLDIHNLNYYSSRTLL
FT                   FQRFSVILTDALFVYAVHECCKCIDGKRTGKDPTEKPKFVLSVLLLWNFGLLIVDHIHF
FT                   QYNGLLSGLLLLSIARLFQKRHIEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTAS
FT                   KPDGSVRWDSFSIVRVTALALIVFLVSALSLGPFLALNQLPQVFSRLFPFKRGLCHAYW
FT                   APNFWALYSALDKALCVTGLELKLLDPSQIPRASMTSGLVQQSQHTVLPSVSPSATLIC
FT                   TLIAILPSVFCLWFKPQGPRGFLRCLVLCALSSFMFGWHVHEKAILLAILPMSLLAVEK
FT                   AGDATIFLILTTTGHYSLFPLLFTAPELPIKILLMSLFTVYSISSLRTLFRKEKPLFNW
FT                   METLYLLGLGPLEVCCEFLFPFTSWKLKYPFIPLLLTSVYCAVGITYAWIRLYASVLTG
FT                   CLVSKTKKH"
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SQ   Sequence 2013 BP; 471 A; 509 C; 435 G; 598 T; 0 other;
     gggactccag gaatggcggc gtttgggctt gcagccggta gtggccattg gttctcggct        60
     ttggctcttg gggtgacact ccttaagtgc cttctcatcc ccacctacca ttccacagat       120
     tttgaagtgc accgaaattg gcttgctatc actcacaacc tcccaatatc tcagtggtat       180
     tatgaggcaa cttcagagtg gaccttggat tatcccccct tttttgcatg gttcgagtac       240
     gccttatcac atattgccaa atactttgat caagagatgc ttgatatcca taacctgaac       300
     tattacagct caaggacact gcttttccag aggttttctg tcatcttgac agatgcgctc       360
     tttgtgtatg ctgttcacga gtgctgtaaa tgcatcgacg gaaaaagaac agggaaagac       420
     cccacagaga aaccgaagtt tgttctgtcc gtgctattgc tgtggaactt cgggttgtta       480
     attgtggacc acattcattt ccagtacaat ggcttgctct ctggcttgct gctgctgtcc       540
     attgcccgtc tgtttcagaa gaggcatatt gaaggggcat ttctctttgc tgtcctcctc       600
     catttcaagc acatctacct ctatgtagcc ccagcctatg gtatctatct gctgcgatct       660
     tactgtttca cggcaagtaa accagatggc tctgtccgat gggacagctt cagcattgtc       720
     cgagttactg ccctggcact gatcgttttc ctagtttccg ctctttcgct aggtcctttc       780
     ctagccttga accagctgcc acaagtcttc tcccgactct ttcctttcaa gaggggcctt       840
     tgccatgcct actgggctcc aaacttctgg gccttgtaca gtgctttgga caaagcactg       900
     tgtgtaactg gtttggaact gaagcttctt gatcccagcc agatccccag ggcctcaatg       960
     acaagtggtt tggtccagca gtcccagcac actgtcctcc cctcagtctc cccctcggca      1020
     accctcatct gcacactgat agccatattg ccctctgttt tctgtctttg gtttaaaccc      1080
     caagggccca gaggctttct ccgatgcttg gttctttgtg ccttaagttc cttcatgttt      1140
     gggtggcatg tccatgaaaa agccatactc cttgcgattc tcccaatgag cctactggct      1200
     gtggaaaaag caggagatgc gacaattttt ctgattctga cgacaaccgg acactattcc      1260
     ctcttccctc tgctcttcac tgcaccagaa ctccccatta aaatcttgct catgtccctg      1320
     ttcactgtgt acagtatctc ctcgctgagg acgctgttca gaaaagaaaa acctcttttt      1380
     aattggatgg aaactctgta cctccttggc ctggggcctc tggaagtctg ctgtgagttt      1440
     ctattccctt ttacctcgtg gaagctgaag taccccttca tccctttgct gctgacctcg      1500
     gtgtactgtg cagtgggcat cacgtacgcc tggatcaggc tgtatgcttc agtgttgact      1560
     ggctgtcttg tcagcaagac aaagaagcat tgaagaaaga agtgtttgga taaaggccaa      1620
     gcagttactt catgggtatt gatcagaact tgaagaaagt tgccagtcgc aggatctatt      1680
     tatttagtag atctgtttaa ggaccattct tccacacttg gccttgtcct gcctagcaac      1740
     ctgattgttt ccatggggag aagctgcttg ccctctctaa gcaacaaaac acatttgaga      1800
     aagctctcac cttcctctgt aaaaatagtc tgtgatcgtt gtgactgccg tgcccactaa      1860
     ggtgaactgg gagatgaaaa gcagcataat gttctgtagc tggtactgac cattgctagg      1920
     atgtaatgca taattagatt ctgttcctaa ggagatataa ataaaatgtc attttatatt      1980
     tgcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa                                   2013
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