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EBI DbfetchID BC099494; SV 1; linear; mRNA; STD; MUS; 1915 BP. XX AC BC099494; XX DT 26-JUL-2005 (Rel. 84, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 8) XX DE Mus musculus malonyl CoA:ACP acyltransferase (mitochondrial), mRNA (cDNA DE clone MGC:117743 IMAGE:30844555), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1915 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1915 RG NIH MGC Project RA ; RT ; RL Submitted (01-JUL-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000134066. DR Ensembl-Gn; ENSMUSG00000048755; Mus_musculus. DR Ensembl-Tr; ENSMUST00000061882; Mus_musculus. DR ImaGenes; IRAKp961G01238Q. DR ImaGenes; IRAVp968E02155D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Shioko Kimura/Atsushi Yamada, (NCI,CCR) CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 238 Row: g Column: 1 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Similarity but not CC identity to protein. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1915 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_230" FT /clone="MGC:117743 IMAGE:30844555" FT /tissue_type="Thyroid, mouse (Black Swiss/Taconic), 4-5 FT weeks, normal wild-type, pooled from 5 mice" FT /note="Vector: pExpress1" FT /db_xref="taxon:10090" FT gene 1..1915 FT /gene="Mcat" FT CDS 25..1170 FT /codon_start=1 FT /gene="Mcat" FT /product="malonyl CoA:ACP acyltransferase (mitochondrial)" FT /db_xref="GOA:Q8R3F5" FT /db_xref="InterPro:IPR001227" FT /db_xref="InterPro:IPR014043" FT /db_xref="InterPro:IPR016035" FT /db_xref="InterPro:IPR016036" FT /db_xref="MGI:2388651" FT /db_xref="UniProtKB/Swiss-Prot:Q8R3F5" FT /protein_id="AAH99494.1" FT /translation="MSARVARAGWAWRSWGRRAASSLREPPPDAVDVAELLRDSSVAEE FT GAQEAVARRRPPSQCSVLLFPGQGCQAVGMGSGLLHLPRVRQLYEAAHRVLGYDLLELC FT LRGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQPAVIDNCVAAAGFSVGEFAALVFAGA FT MDFSEGLYAVKARAEAMQEASEAVPSGMLSVLGQRQSNFSFACLEAQEHCKSLGIENPV FT CQVSNYLFPDCRVISGHLEALQFLRRNSAKYHFRRTKMLPVSGGFHTCLMEPAVDPLMK FT VLGSINIKKPLVAVHSNVSGQKYTHPQHIRKLLGQQVVSPVKWEQTMHSIYERKKGMEF FT PSTYEVGPGQQLGSILKCCNRQAWKSYSHVDVMQNIMDPDP" FT misc_difference 1511 FT /gene="Mcat" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 1894..1915 FT /gene="Mcat" FT /note="polyA tail: 22 bases do not align to the mouse FT genome." XX SQ Sequence 1915 BP; 385 A; 541 C; 576 G; 413 T; 0 other; cgaccaccgg ctctgcgcgt cgcaatgagc gctcgggtag ctcgggccgg gtgggcctgg 60 cgctcctggg gccgccgcgc cgcctcgagc ctccgggagc cgccgccgga cgccgtggac 120 gtggcggagc tgctgcggga ctccagcgtg gccgaggagg gagcccagga ggcggtggcg 180 cggcggcggc caccttcaca gtgctccgtg ttgctcttcc ccggccaggg ctgccaggcg 240 gtcggcatgg gcagcggcct gctccacctc ccgcgtgtgc ggcagctcta cgaggccgcg 300 caccgggtac tgggctacga tctgctggag ctgtgcctgc gggggcccca ggaggacctg 360 gaccgcacag tgcattgcca gcccgccgtc tttgtggctt cactggccgc cgtggagaag 420 ctacatcatc tgcagccggc ggtcatcgac aactgtgttg ctgcggctgg cttcagtgtg 480 ggagagtttg ctgccttggt atttgctgga gccatggatt tttctgaagg tctgtatgcg 540 gtgaaggccc gtgccgaagc tatgcaagaa gcatccgaag ccgttcccag tgggatgctg 600 tctgtccttg gccagcgtca gtccaacttc tcctttgcct gcttggaagc ccaggagcac 660 tgcaagtctt tgggtataga gaacccagtg tgccaggtgt ccaactacct ctttcctgac 720 tgcagggtca tctcaggaca ccttgaggcc cttcagtttc tccggaggaa ttctgctaag 780 tatcacttcc ggcgcaccaa gatgctgcct gtaagtggag gcttccatac ctgcctcatg 840 gagccagccg tggatcccct gatgaaagtt ctaggctcga tcaacatcaa gaagccactg 900 gttgccgtcc attccaatgt cagtgggcag aagtacacac atccacaaca catccgaaag 960 ctgctagggc agcaggtggt gtcgccagtg aaatgggaac agacaatgca ctctatctac 1020 gagcggaaga aaggcatgga gttccccagc acctacgagg tgggccccgg gcagcagctg 1080 ggaagcatcc tcaagtgctg caacaggcag gcgtggaagt cctacagcca tgtggatgtg 1140 atgcagaaca tcatggatcc tgacccctga gggccttggg cttagaatgg ccccagtgtg 1200 agcctctgtg cctgcctctt ttcctcagac ttgaggacga tggacactgc agtctcagct 1260 gtggctcagg ctccctcaga gcatagtctt tgagtgccta tcctccaact gacaggacat 1320 cgggctgctg gggaaagggc gcctgtgcag acggcctgcc cggccagaat gctgctctgc 1380 ctctgcaccc aaccatgttc ctcggtgaac ccagaagggc tagcctgggc agtcttagac 1440 tcatcctgtg ggtattgtgg acacactgct tggcttcaag ctaggcctgg tgccagagga 1500 tcgtctcagc cgcctgtgac gtgctccttt ggtcttgaat cttgaatcaa ggtgtggtgg 1560 ccttgttctt cactcacttg gcaggtggga gattgagtcc cgtgtgccat acagacctca 1620 gaagcactta ttaagtgcct gtgtatgtcc tagaatgggt ggtcctttgt ataagaaact 1680 aggagaaccg tgtaaggtgt ggagtgggaa ccctgtcttt cctaggccag cctgtgttca 1740 ttcacacaga gacaccacca acagcaggtc atccatggga cagtgtgtct catactgtgt 1800 ttatggcttc ctcagagcag tctgctccac agcaggagtg gggcaatgct cctgggaaga 1860 catataataa acatgagcca ttctaagctg ccaaaaaaaa aaaaaaaaaa aaaaa 1915 // |
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