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EBI DbfetchID BC099075; SV 1; linear; mRNA; STD; ROD; 4280 BP. XX AC BC099075; XX DT 04-JUL-2005 (Rel. 84, Created) DT 18-JUL-2006 (Rel. 88, Last updated, Version 6) XX DE Rattus norvegicus dehydrogenase E1 and transketolase domain containing 1, DE mRNA (cDNA clone MGC:116097 IMAGE:7441857), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-4280 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4280 RG NIH MGC Project RA ; RT ; RL Submitted (01-JUL-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998G0715737Q. DR ImaGenes; IRAKp961N12231Q. DR ImaGenes; IRBPp993E1245D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Josef Lazar, Dr. Howard J. Jacob, Medical CC College of Wisconsin CC cDNA Library Preparation: Open Biosystems CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 231 Row: n Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 71043639. XX FH Key Location/Qualifiers FH FT source 1..4280 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_270" FT /clone="MGC:116097 IMAGE:7441857" FT /tissue_type="Placenta, day 21 of pregnancy, pooled 2." FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..4280 FT /gene="Dhtkd1" FT CDS 70..2832 FT /codon_start=1 FT /gene="Dhtkd1" FT /product="dehydrogenase E1 and transketolase domain FT containing 1" FT /db_xref="GOA:Q4KLP0" FT /db_xref="InterPro:IPR005475" FT /db_xref="UniProtKB/Swiss-Prot:Q4KLP0" FT /protein_id="AAH99075.1" FT /translation="MASATVAAAGRALRRAVPLLRRSYQTERGVYGYRPRKAGSGEPRG FT DRARPSVDHGLARLVTVYCEHGHKAAQINPLFPGQALLDTVPEIQALVQTLQGPFTTTG FT LLNMGKEEASLEEVLAYLNHIYCGPISIETAQLQSQEEKDWFARRFEELKKETFTTEER FT KHLSKLLLESQEFDHFLATKFATVKRYGGEGAESMMGFFHELLKLSAYGGITDIIIGMP FT HRGRLNLLTGLLQLPPELMFRKMRGLSEFPENVAAIGDVLSHLTSSVDLDFGAHRPLHV FT TMLPNPSHLEAINPVAVGKTRGRQQSQEDGDYSPNGSAQPGDKVICLQVHGDASFCGQG FT IVLETFTLSNLPHFRIGGSIHLIVNNQLGYTTPAERGRSSLYSSDIGKLVGCAIIHVNG FT DSPEEVVRATRLAFEYQRQFRKDVIIDLLCYRQWGHNELDEPFFTNPVMYKIIRARKSI FT PDTYAEHLIASGLMTQEEVSDIKASYYAKLNGHLANVAHYSPPAPHLQARWQGLVQPAA FT CVTTWDTGVPLELLRFVGVKSVEVPEELQLHSHLLKMYVQSRMEKVKNGTNLDWATAET FT LALGSLLAQGFNVRLSGQDVGRGTFSQRHAMVVCQNTDDVYIPLNHMDPNQKGFLEVSN FT SPLSEEAVLGFEYGMSIESPKLLPLWEAQFGDFFNGAQIIFDTFISGGEAKWLLQSGLV FT ILLPHGYDGAGPDHSSCRIERFLQMCDSAEEGVDSDTVNMFVVHPTTPAQYFHLLRRQM FT MRNFRKPLIVASPKMLLRYPVAVSTLEEMAPGTAFKPVIGDSSVDPKNVKTLIFCSGKH FT FYALLKQRESLGAKKRDFAIIRLEELCPFPLDSLQQEMGKYKHVQDIIWSQEEPQNMGP FT WSFVYPRFEKQLACKLRLVSRPPLPAPAVGIGTVHQQQHEAILFKTFTS" XX SQ Sequence 4280 BP; 1086 A; 1053 C; 1024 G; 1117 T; 0 other; ccctcgccct ctgcttggtt gcagcttttt ccccccattc ttccacgcgt cttcgacccc 60 agactgcaca tggcatcggc tactgtggca gctgcaggga gagctctccg ccgagcggtc 120 ccgcttctca ggcgcagtta ccagacggag aggggcgtct atggataccg gcctaggaaa 180 gccgggagcg gcgagccccg aggcgaccgt gcacgcccct cagttgacca tggccttgcc 240 aggctggtga cagtgtattg tgagcatggc cacaaagctg cccagatcaa ccctctcttc 300 cccggacaag ccctcctgga tactgtgcct gaaatccaag ctcttgtgca gacactccag 360 ggacccttca ctaccacagg actgttaaac atgggcaaag aagaggcttc tcttgaggaa 420 gtgttggcct atttgaacca tatctactgt gggccaattt ctattgaaac cgcccagctg 480 cagagccagg aggagaaaga ctggtttgcc agaaggtttg aggaactgaa aaaggagaca 540 tttaccacag aagagcgaaa acacctgtcg aaactactgc tagaatctca ggagtttgac 600 cactttttgg ccaccaagtt tgccacagtg aagagatacg gaggtgaagg ggcagagagc 660 atgatgggct tttttcacga gttgctgaaa ttgtcagcct atggcggtat aacggacatc 720 attatcggga tgccccacag agggaggctg aatctgttga caggccttct gcagttacct 780 ccagagctga tgttccgtaa aatgcgaggc ttaagtgagt ttccagaaaa cgttgctgcc 840 attggtgacg tcctgtccca tctgacctcc tcagtggacc tagactttgg ggcccatcga 900 cccctccatg tgacaatgct acccaacccc tcacacctgg aagctattaa ccccgtggct 960 gtagggaaaa ctcgtggcag gcagcagtct caggaagacg gggactactc accaaatggt 1020 tctgctcagc ctggggacaa agtcatatgc ctgcaggttc atggcgacgc ttccttctgc 1080 ggtcaaggga ttgttctgga gacgttcacg ctctctaatc tcccacattt cagaatcggt 1140 gggagcatcc atctcatagt caataaccag ttgggttaca ccacgcctgc tgagagagga 1200 aggtcgtcct tatacagcag tgacattgga aagctagtag gctgtgccat catccatgtc 1260 aacggagaca gtccagagga agtggtccga gcgacacgac ttgcttttga gtatcagcgc 1320 cagttccgca aggacgtgat tattgatttg ttatgctata ggcagtgggg tcacaatgag 1380 ctggacgaac ctttcttcac caacccggtc atgtacaaaa tcatcagagc tcgaaagagc 1440 attcctgata cctacgcaga gcacctcatc gccagcggac tcatgacgca ggaggaggtc 1500 tccgacataa aagcctccta ctacgccaag ttaaatggcc acttggccaa tgtggcccac 1560 tacagccccc cggccccgca cctgcaggcc cgctggcagg gcctggtgca gccagcagcc 1620 tgcgtcacca cctgggacac gggcgtgccg ctggagctgc tacggttcgt tggcgtgaag 1680 tccgtggagg ttccagagga gctgcagtta cacagccacc tgctaaagat gtatgttcag 1740 tcaagaatgg agaaggtgaa gaatggaacc aatcttgact gggccaccgc agaaacactt 1800 gccttgggct ccttacttgc tcaaggtttc aatgttcgtc tgagtggcca agatgttggc 1860 cgtggaactt tcagtcaaag gcatgcaatg gtggtttgcc agaacactga tgatgtctac 1920 attcctctga accacatgga ccctaaccag aagggctttc tggaggttag caacagcccg 1980 ctgtcagaag aggctgtctt gggatttgaa tacgggatga gcatcgaaag cccaaagttg 2040 ctgcccctct gggaagctca gtttggcgat ttcttcaatg gagcccagat catctttgac 2100 acattcatct ctggaggcga ggccaagtgg ctcctgcaga gtggccttgt catcctcctt 2160 ccacacggct atgatggagc cgggcctgac cactcatcct gtcggataga gcgcttcttg 2220 cagatgtgcg acagtgcgga agaaggcgtg gacagcgaca ctgtgaacat gtttgtggtt 2280 cacccgacta cgcctgctca gtacttccac ttgcttagaa gacagatgat gcggaacttc 2340 agaaagcctc tcatcgttgc atctcccaaa atgttactca ggtaccctgt agctgtgtca 2400 acgcttgagg agatggcgcc aggaacagca ttcaaacctg tcattggtga ttcgtcggta 2460 gaccccaaaa atgtcaaaac cctcatattc tgctccggca aacattttta tgccctgctg 2520 aagcaaagag agtctctggg ggctaagaag cgtgattttg ccatcattcg actagaggaa 2580 ctctgccctt tcccgctgga ttcattacaa caagagatgg gcaaatacaa acacgttcaa 2640 gatatcatct ggagtcagga ggagcctcag aacatgggtc cgtggtcttt tgtttatcca 2700 aggtttgaaa agcaacttgc ttgcaagctc cgtctcgtaa gtcgaccccc tttgccagcg 2760 cccgcggtgg gaattggcac agtgcaccag cagcagcatg aagccatcct cttcaagacc 2820 ttcacttcct aacgtgctct ggggaaacag gatcgccttt taagcaacat gtcccaggag 2880 aaagcttgtt cctcaactcc ctctcctttc ctttagctta gcgcggaagt ctgtgttcct 2940 ctgaaattct ggactgattt ggacaactga atctggagtg tgtgggatac acaggggagt 3000 tgatttttta taagcacatg aaacagacag tagatttcac acttttcagg accacagtgt 3060 ttgtcatgct ttagttatat gtgagtgaag tggcagagga ggtcatgagg cagttggatt 3120 ctgactgtac tggaactgac cttaaatgag tagagaacat tcttggccag aacgtggcac 3180 tgtgtagagg cagccccaac actacctctt aattggttta ttacatgtaa ctttccatat 3240 tttccctccc ttttaaagtc agcagtattt tcgttttaaa tgtcatctta gagccgctct 3300 acaaaatgtt ccaacagaca ccactaaaac tagaccattc cgaattcatg ttctttcgag 3360 ttttatccat tatccttaaa agtaagtgct gttacaccca cattcctgat tgtatgatct 3420 tctagctctg taccaataca gggtttcctg tagtccagac tggcctcata ttcactgcat 3480 agctgaagat gaccttgaac ttctgatctt tttacctcta cctcctgagt gctggaattg 3540 cagacttgtg caattatgcc cagttaatgc tggcaatgag tatccattaa ggatggtagc 3600 ccccaagctc tctaccaact gagctacagc cctggcccct aataatttta tgttatgaag 3660 tattagctgt attaaaatgg acttgttctt ttcctattaa gatccccaac ctgttatatt 3720 gctgtgatat tttctaattt ttcaattaac cggcatttga tagagggatg tcagtgccag 3780 gttaatcact tttgtctcta aaagttgcag gtacaattat gatgtatatt tttgctataa 3840 attacattaa gtttagccac cttctcaaac caggcacttg gggttccaca gaggttgaac 3900 ctagttcgaa gcaacctaag cggtagttat gtggcgtcac ttgaggtggt tctgaggagc 3960 atctaccatg tacattctgg cttatgatgg attttctaaa aggtgattga ggacatagga 4020 agtgctgaaa tatatccatt gcctttccgg ttttgccagc catgggccat gtcttacatc 4080 cttcagtcct ttcttgtgtc aatccttacg aatcttgtaa tatagtacca tttaaattgg 4140 taaagtttca aaggcaagtt tagtaggaat gtacatttat tctcttatct tttggtttcc 4200 caaatgaaaa gatattgaaa ctctaactat acaataaatg gaatttgacg tatttaaaaa 4260 aaaaaaaaaa aaaaaaaaaa 4280 // |
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