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EBI DbfetchID BC098700; SV 1; linear; mRNA; STD; ROD; 1536 BP. XX AC BC098700; XX DT 26-JUL-2005 (Rel. 84, Created) DT 12-JUN-2008 (Rel. 96, Last updated, Version 6) XX DE Rattus norvegicus tRNA aspartic acid methyltransferase 1, mRNA (cDNA clone DE MGC:112666 IMAGE:7387075), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-1536 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1536 RG NIH MGC Project RA ; RT ; RL Submitted (01-JUL-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000005051. DR Ensembl-Gn; ENSRNOG00000026132; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000038651; Rattus_norvegicus. DR ImaGenes; IMAGp998D1715556Q. DR ImaGenes; IRAKp961P05225Q. DR ImaGenes; IRBPp993D0640D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Drs. Josef Lazar & Howard Jacob, Medical CC College of Wisconsin CC cDNA Library Preparation: Open Biosystems CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 225 Row: p Column: 5 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 72255516. XX FH Key Location/Qualifiers FH FT source 1..1536 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_251" FT /clone="MGC:112666 IMAGE:7387075" FT /tissue_type="Thymus, rat" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..1536 FT /gene="Trdmt1" FT /note="synonym: Dnmt2" FT CDS 35..1210 FT /codon_start=1 FT /gene="Trdmt1" FT /product="tRNA aspartic acid methyltransferase 1" FT /db_xref="GOA:Q4G073" FT /db_xref="InterPro:IPR001525" FT /db_xref="InterPro:IPR018117" FT /db_xref="UniProtKB/Swiss-Prot:Q4G073" FT /protein_id="AAH98700.1" FT /translation="MEPLRVLELYSGIGGMHHALRESRVPAHVVAAIDVSTVANEVYKH FT NFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMSDRRTNSFLYILD FT ILPRLQKLPKYILLENVKGFEVSSTRGLLIQTMEACGFQYQEFLLSPSSLGIPNSRLRY FT FLIAKLQSEPLCFQAPGQILMEFPNSGTVQPQEYAVVEEGKLRVRTREPDVCLDSSSTQ FT CSGQDSILFKHETAADIDRKRQQDSDLSVQMLKGFLEDGDTAQYLLPAKSLLRYALLLD FT IVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLPDLPPEEKIAKLSMLKL FT RYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLTVLCE" XX SQ Sequence 1536 BP; 447 A; 326 C; 342 G; 421 T; 0 other; ctagtttcca ggccgcggtc gcggttgcga gaggatggaa cctctgcgtg tcctggagct 60 gtacagtggc attgggggca tgcaccacgc gctgcgagaa agccgtgtcc ctgcacatgt 120 ggtggctgct attgacgtga gcactgttgc taacgaagta tacaagcata acttccctca 180 tacacactta ctggcaaaga caatcgaagg tatttcactg gaagagtttg acaagctatc 240 tttcaatatg attttaatga gccctccatg tcagccattc acaagaattg gcctacaggg 300 ggacatgagt gatcgaagga caaatagctt cttgtatatt ctagatattc tcccaaggtt 360 acagaagtta cccaagtata ttcttttaga aaatgtcaaa gggtttgaag tttcttctac 420 aagagggctg ctgatacaaa caatggaagc ctgcggcttt cagtatcaag agtttctgtt 480 gtctccgtcc tctctaggca ttccaaactc aaggctacgg tattttctca ttgcgaagct 540 tcagtcagag cctctctgtt tccaggcccc tggccagata ctgatggagt ttcctaatag 600 tggaacagtt cagccacaag aatatgcagt agttgaagaa ggcaagctga gagtgaggac 660 aagggagcca gatgtctgcc ttgatagcag cagcacccag tgctctggac aagatagcat 720 tctttttaag cacgagactg cagcagacat tgacaggaag cgccaacagg acagtgacct 780 ctctgtgcag atgctgaaag gtttccttga agatggtgac acagctcagt accttctgcc 840 agcgaagtcg ctgctgcgct acgctctcct cctcgacatc gttaagccca cctccaggag 900 gtccatgtgc ttcactaaag ggtatggaag ctacatagaa gggacaggct ctgtgttaca 960 gactgcagag gatgtgcaga ttgagaatat ctacaaatct cttcctgatt tgccaccaga 1020 agagaagata gctaaattgt caatgcttaa actgcgatat ttcacaccta aagaaattgc 1080 aaatctcctg ggatttcctc cagaatttgg gtttcctgag aagacaacgg tgaagcagcg 1140 ttaccggctg ctcggcaaca gcctcaacgt gcatgtcgtc tcaaagctcc ttacagtcct 1200 gtgtgagtga gagacgtggg agagccgctg aggcgtcaga gtatgcctct aattctagac 1260 agtcatccca aaattctatc ttgaattaat tcttataaaa ctcaactaaa ttattttagt 1320 tgcgttttag cgggtaattc agagggaact taaatgtgca tatcttattg tttccttaaa 1380 tttatattac tgtatctgac aaacttcaca ttgctgtttt tgctttatgg gcaaatattt 1440 tttataaagc tttaaacatg tacattaaat attttatatt ttgctataaa caaatttaag 1500 aatgttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa 1536 // |
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