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EBI DbfetchID BC095802; SV 1; linear; mRNA; STD; VRT; 2279 BP. XX AC BC095802; XX DT 10-MAY-2005 (Rel. 83, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Danio rerio asparagine-linked glycosylation 3 homolog (S. cerevisiae, DE alpha-1,3-mannosyltransferase), mRNA (cDNA clone MGC:112396 IMAGE:7397629), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2279 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2279 RG NIH MGC Project RA ; RT ; RL Submitted (06-MAY-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000053155; Danio_rerio. DR Ensembl-Tr; ENSDART00000075146; Danio_rerio. DR ImaGenes; IMAGp998D1115583Q. DR ImaGenes; IRAKp961A18224Q. DR ImaGenes; IRBOp991F0764D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: John Postlethwait, University of Oregon CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 224 Row: a Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 63100960. XX FH Key Location/Qualifiers FH FT source 1..2279 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_5" FT /clone="MGC:112396 IMAGE:7397629" FT /tissue_type="Ovary" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2279 FT /gene="alg3" FT /note="synonym: zgc:112396" FT CDS 39..1343 FT /codon_start=1 FT /gene="alg3" FT /product="asparagine-linked glycosylation 3 homolog (S. FT cerevisiae, alpha-1,3-mannosyltransferase)" FT /db_xref="GOA:Q501Z4" FT /db_xref="InterPro:IPR007873" FT /db_xref="UniProtKB/TrEMBL:Q501Z4" FT /db_xref="ZFIN:ZDB-GENE-050522-334" FT /protein_id="AAH95802.1" FT /translation="MAGGKKKSSTAPSRFQKTLSSIWQDKHTVLFKPEYTLLVTAVLWF FT LEIAINIWVIQKVSYTEIDWKAYMDEVEGVINGTYDYTQLKGDTGPLVYPAGFVYIFTG FT LYYLTDHGHNIRLGQYVFAVSYLINLLLVMRIYHRTKKVPPYVFFFICCASYRIHSIFI FT LRLFNDPVAMMLCFGAINLFLDGRWTLGCALYSLAVSVKMNVLLFAPGLLFLLLCEFGL FT WKTLPRLALCAVIQLVLGLPFLLVNPVGYVSRAFDLGRQFLFKWTVNWRFLPEDVFLNR FT YFHLALLLAHITTLLLFALKRWKRSGSSIWTILKDPSERKETAHKVNADQMVLILFTSN FT FIGMCFSRSLHYQFYVWYFHTLPYLLWSGGVKKLARLLRVLILGLIELSWNTYPSTNYS FT SLSLHVCHLIILLCLWLNPNPASPSHRSENKAKSH" XX SQ Sequence 2279 BP; 594 A; 473 C; 505 G; 707 T; 0 other; agttcccgtt tgtcgctgac ttctcgaagg cggccaacat ggcaggagga aagaagaaat 60 cctctacggc accgtcaaga tttcaaaaaa cactgtcctc catatggcag gacaagcata 120 cggtgttgtt taaacccgag tacacgctgc tggtcactgc cgtcctttgg ttcttggaaa 180 ttgcgatcaa catatgggtg atccagaaag tttcatatac agaaatcgac tggaaggcgt 240 acatggatga agtggaggga gttattaatg gcacatatga ttacacacaa ctgaagggcg 300 acacgggacc cctggtgtat ccagctggtt ttgtatatat cttcacagga ctgtattatc 360 tcactgatca tgggcataac attcgtttgg gtcagtatgt gtttgctgtg tcctacctca 420 tcaatctcct gctcgtgatg cgcatttacc atcgcaccaa aaaggttcct ccatatgtgt 480 ttttcttcat ctgctgtgct tcatatcgca ttcactccat cttcatcttg cgcctcttca 540 atgatccggt ggccatgatg ctgtgttttg gggccattaa tctctttctg gacggccgct 600 ggactctagg atgtgctctt tacagtttag ctgtgtctgt gaagatgaat gttctgcttt 660 tcgctcctgg tctcctcttc ctcctgctgt gtgagtttgg tctgtggaaa actttaccca 720 gactcgctct ctgtgctgtc attcagctgg ttttgggact gccgttcctt ttagtgaacc 780 ctgttgggta tgtcagccgg gcctttgacc tgggcaggca gtttctgttt aagtggactg 840 tgaactggcg ctttcttcct gaggatgtgt tcttgaatcg atactttcac ttggctttgc 900 ttttggctca cattactaca ctgcttctgt tcgctctgaa gagatggaaa aggtctggga 960 gcagtatttg gactatacta aaagatccat ctgagagaaa ggagactgca cataaagtta 1020 atgccgatca gatggttctt attctgttta catctaactt cattggcatg tgcttcagca 1080 gatctctgca ttatcagttt tatgtctggt attttcatac gctgccctac ctgctgtgga 1140 gtggaggagt gaagaagctg gcacgcctac tcagagtgtt gattctgggt ctgatagagc 1200 tgtcctggaa cacgtatcca tccaccaact acagctctct gtctctgcac gtctgccacc 1260 tcatcatcct cctctgttta tggctcaacc ccaatccagc ttctccatct cataggtcag 1320 aaaataaggc taagagccac tgaaacccct gtctgaccgg gagcctcgct gtgtgggaca 1380 atcactgctc tacagctcct acaccacagt gaaatacaag ggtgttcagg gacccgtgcc 1440 atcaaatgga tgttgaaatg gtttggatat gaagggagtg tgaagttaat atattgggga 1500 acagagagtt tacagtgctt ctcaggatga ttaaggacta atgtgaggct tgggctggga 1560 tgacaaagct ggtgggaaat ttgagtgtca gttttgattg gcaggtcatt ttaacgacac 1620 acttattttt gtgcagcatg tcgaggcaaa ggacatgaag gtaaacttag tcttatcttt 1680 tatggacagc tatggaaaga gtactagaaa attctgttta tgaagatgtg cttctactac 1740 tattgattgg gaatgataaa attttgtttt ttttcttaat gtctaataac atctcttcct 1800 cataaaagaa atattgtgca atcactgatc ttggtaagac tttgttttga tgctccctat 1860 tgtacatttt gttgactaaa agttgcacta catgccaacg gattctcatt tgattattag 1920 tagactgtct gcttgcttaa tatctgctga tactgctctt tcaacagact gactgtaaga 1980 aactttgcaa atgcatgtaa cttgcactaa ccctaacccc aattgaacag tctgcttgtg 2040 atctaatgag aattggttgg cctgtagatg caatgttact tgcattcaag aaaatgcgtt 2100 aaagtggcca tcaaaataaa gtgatagcct gacctttata gaatgactct ctacagtaca 2160 tagaccagtg actgtaattg tgaggttttt atatagaagc agaaaatgac caaaaaaact 2220 ttgcaaatta aaaacaaatc atgattattc tgccaaaaaa aaaaaaaaaa aaaaaaaaa 2279 // |
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