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EBI DbfetchID BC095683; SV 1; linear; mRNA; STD; VRT; 2680 BP. XX AC BC095683; XX DT 10-MAY-2005 (Rel. 83, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Danio rerio zgc:112177, mRNA (cDNA clone MGC:112177 IMAGE:7431881), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2680 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2680 RG NIH MGC Project RA ; RT ; RL Submitted (06-MAY-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000020898; Danio_rerio. DR Ensembl-Tr; ENSDART00000005179; Danio_rerio. DR ImaGenes; IMAGp998G1515672Q. DR ImaGenes; IRAKp961G17226Q. DR ImaGenes; IRBOp991A0767D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Will Talbot CC cDNA Library Preparation: Dr. Yutaka Suzuki and Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 226 Row: g Column: 17 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 63102502. XX FH Key Location/Qualifiers FH FT source 1..2680 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_15" FT /clone="MGC:112177 IMAGE:7431881" FT /tissue_type="Embryo, whole, 2-8 hr, mixed wild type, pool FT of 2500 embryos" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2680 FT /gene="zgc:112177" FT /note="synonym: MGC112177" FT CDS 240..1823 FT /codon_start=1 FT /gene="zgc:112177" FT /product="zgc:112177" FT /db_xref="GOA:Q502I6" FT /db_xref="InterPro:IPR001433" FT /db_xref="UniProtKB/Swiss-Prot:Q502I6" FT /db_xref="ZFIN:ZDB-GENE-050522-225" FT /protein_id="AAH95683.1" FT /translation="MLNVPSQAFPAAGSQQRVAPAGQSRNKVVLKPGHSLLDWIRLTKS FT GQDLTGLRGRLIEVTEDELKKHNTKKDCWTCIRGMVYNLSAYMDFHPGGEEELMRAAGI FT DSTDLFDEVHRWVNYESMLKECLVGRMAVKPSPALQAHTEKTESTHLNGLSAPPSLRPE FT PLSAPLPAKDHRPRYDWFQTDGTVNIVVYTKRKIPSAGCAVVDLQDDNLRVEMLLGRMS FT YLLYWRLSSRVQDHVDVQTAHSVGKVQLCLRKSVKEKWTQLGQSLEHHDTFIQCKDRGL FT FYRECVLLSKTDVTHNTQLLRLQLPRGSRMQVPVGRHVYLKTSVQGTDVVKPYTAVDQM FT LIPPSQSSAEVGSDIHLMIKVYPDGVLTPHIANLPIGASLSVGGPEGSFTLRVLRDVTH FT LYMLAAGTGFTPMARLIRLALQDFTVIRKMKLMFFNRQERDILWQSQLDELCTKEERFE FT VQHVLSEPADSWTGRRGRIDACMLQNFLERPENSKCLVCVCGPAGFTESAVQLVRQLDF FT SEEELHVFQA" XX SQ Sequence 2680 BP; 757 A; 573 C; 650 G; 700 T; 0 other; aggcaaaatc aattttaact gcacttgctt tcagaataca acaacacgtt ccattagttt 60 gatctgattg ttgattgagg gacatatttt actctggaat ggtagaagaa gatggtgtgg 120 acttggagga ggaagaagag gaagattata gatcagaaaa cagaagtaaa gcttcaacag 180 tcttttctgt catcgccagt gttttgtctg ggaactgggc ttgttttaaa gtatcagaga 240 tgctgaatgt cccatctcag gctttccctg ctgctggatc ccagcagaga gtcgcgccag 300 ccggacagtc cagaaacaag gtggtgctga agcctggtca cagtttgctg gactggatcc 360 gactgaccaa aagtggacag gatttaacag gactgagagg tcgactgatc gaggtcacag 420 aagacgagct gaagaaacac aacaccaaaa aagactgctg gacgtgcatt agaggtatgg 480 tctataactt gagtgcctac atggatttcc accctggtgg ggaagaggag ttaatgcggg 540 ctgctgggat tgatagcact gacctgtttg acgaggtcca ccgatgggtg aattatgagt 600 ccatgctgaa ggagtgtttg gtggggagga tggcagtaaa gcccagccct gctctacaag 660 ctcacacaga gaagactgag agcactcatt taaacggttt atctgcgcct ccatctttaa 720 gaccagagcc tttatctgct cctcttcctg ccaaagacca tcgtcctcgg tatgattggt 780 tccagacaga tggcacggtt aatattgttg tttacaccaa gcgaaagatt cccagcgccg 840 gctgtgcagt ggtggatcta caggatgata atctcagagt agagatgctg ttgggcagga 900 tgtcgtacct tctctactgg cgcctgtcca gtagagttca agatcatgtt gatgtgcaga 960 cagcccactc tgttggaaag gttcagttgt gcctgcgcaa atccgtcaaa gaaaagtgga 1020 cgcagttggg gcaatcgctt gaacaccatg acacattcat tcaatgtaaa gatcgagggc 1080 tcttctacag ggagtgtgtg ctgctttcga aaacagacgt cacacacaac acgcagctct 1140 tgcgcttgca gcttcctcga gggtcacgta tgcaagttcc tgtgggaaga cacgtctacc 1200 tcaaaacgtc tgtccagggt acggatgttg ttaaacccta cacagcagtg gatcagatgc 1260 taatacctcc ctcacagtcc agtgctgaag tgggctcaga catacatctc atgataaagg 1320 tctatccgga tggagtgttg accccgcaca tcgccaacct tcctattgga gcgtctctgt 1380 ctgtaggagg ccctgaaggc tcctttactc tgcgagtcct acgggatgtc actcatctct 1440 acatgttagc agcgggcaca ggattcacac ccatggctcg tctcatccgg ctggccctgc 1500 aggacttcac agtgatcaga aaaatgaagc tgatgttctt caaccggcag gagagagaca 1560 tactttggca gtcacaactg gatgaattat gtacaaaaga ggaaagattt gaggtgcagc 1620 atgttctctc agagcctgca gactcgtgga cgggcagaag aggacggata gatgcttgta 1680 tgctgcagaa cttcctggag aggccagaaa actccaagtg tttagtgtgc gtgtgcggcc 1740 ctgctggatt cacagagtca gcagtgcaat tggtcagaca gctggacttc agtgaagagg 1800 aactccatgt ttttcaggct tgattgcgat gtaacagatt tctcacacac acacacacac 1860 tcgcagattt tttctatgca tatataaaaa gcactttcca atgaaaagaa aacctctcat 1920 gaagctgcaa cacttgtcat ctttcagttt gtgggaatcc aatgcatata gactcaacta 1980 atgcacttac agattgtctt gaagcactat aagacaacca gtccatcaat cagagttcaa 2040 tcaaacgcat cctaacattt catcccagaa gcggctgaaa tattaggacg tttaagacag 2100 acgccttaag caggacaact ctgcaacatt aaaacagatg atctattatg ctgtccacat 2160 gtttaccgac atcctgcaag gacttgagag gtttggagca atatcgttct gtaaatcaat 2220 gcgactaaaa catgacgtac tgttggaagc aaatgattta taacatagca gtaaacctga 2280 atgcaggaca agtgcagtct tcactgtttg taaatgctaa ttcgactgcc acatgctgtt 2340 ttcttaacag tgtagatgat gttctgtaat atggtttgta cctctagtgc tgttgaatct 2400 cgtggaatgt tgtatttctg aggtctatca cgggtctgat gacggttttg ggaggggatg 2460 aaaactgttc tagcacagca ctctgttaaa ccagcagacc aggctgtttg ttgtacgcta 2520 ctttagataa aatgcgaagc tgagatctaa atatttattt attgatgtaa actcttgact 2580 gtaaaaccca gcgatattga tttgacaatt aatggcttcc aacagaggtg attggtcgtt 2640 tcataattaa atgtttcact taagaaaaaa aaaaaaaaaa 2680 // |
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