 |
|
EBI DbfetchID BC095663; SV 1; linear; mRNA; STD; VRT; 2096 BP. XX AC BC095663; XX DT 10-MAY-2005 (Rel. 83, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 10) XX DE Danio rerio mannosyl (beta-1,4-)-glycoprotein DE beta-1,4-N-acetylglucosaminyltransferase, mRNA (cDNA clone MGC:112067 DE IMAGE:7413890), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2096 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2096 RG NIH MGC Project RA ; RT ; RL Submitted (06-MAY-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000038069; Danio_rerio. DR Ensembl-Gn; ENSDARG00000058425; Danio_rerio. DR Ensembl-Gn; ENSDARG00000062868; Danio_rerio. DR Ensembl-Tr; ENSDART00000033152; Danio_rerio. DR Ensembl-Tr; ENSDART00000055493; Danio_rerio. DR Ensembl-Tr; ENSDART00000083584; Danio_rerio. DR Ensembl-Tr; ENSDART00000091349; Danio_rerio. DR ImaGenes; IMAGp998I2415625Q. DR ImaGenes; IRAKp961L15224Q. DR ImaGenes; IRBOp991D0866D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: John Postlethwait, University of Oregon CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 224 Row: l Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 63101977. XX FH Key Location/Qualifiers FH FT source 1..2096 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_5" FT /clone="MGC:112067 IMAGE:7413890" FT /tissue_type="Ovary" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2096 FT /gene="mgat3" FT /gene_synonym="zgc:112067" FT CDS 121..1602 FT /codon_start=1 FT /gene="mgat3" FT /gene_synonym="zgc:112067" FT /product="mannosyl (beta-1,4-)-glycoprotein FT beta-1,4-N-acetylglucosaminyltransferase" FT /db_xref="GOA:Q502K4" FT /db_xref="InterPro:IPR006813" FT /db_xref="UniProtKB/TrEMBL:Q502K4" FT /db_xref="ZFIN:ZDB-GENE-050522-249" FT /protein_id="AAH95663.1" FT /translation="MRVKRHKVFLVCLLGICVVSFLHYYTALHNISLLQEISSPSSHLN FT TLKMLRGFFWNFPTDDIPFKQDRQKSSHQKDFVDLPDLPDAKQVVTNLHKQIFELRDDS FT TPFFTHTESGALCFHEGTDLAAFASQGRLLKHYEERTPLKDDLINAGKKDVRCPCRQGW FT HGPQCGIPTVVYHSNLPSKSKVTPRKIPRRVINAININHEFDLLHTRFHELADVVDTFL FT VCESNFTAYGDARPLYLKHLILNGTFDYIKHKILYIFLDHFPDGGRMDGWIADDYLRTY FT LTKNGMARIQGLKPDDVFILNDADEIPSRDGILFLKLYDGWTEPVGIHLRKSLYGFFWR FT QYGTLNVLSACTAAMLFKVYKGDGIYLRRRSYYTMSGFREYENSTGRILIPWAIGSPVH FT YAGWHCSWCFKPEGIYYKLVSAQNGDFPRWGDYGEKRKLSYIKDLIRTGGWFDGSEPDY FT PPTDPKEHMYAPKYLLDNYDKYHYLLENPYAKGKR" XX SQ Sequence 2096 BP; 618 A; 435 C; 460 G; 583 T; 0 other; gtgcgaatga agtcgggcag ctgccaggag tgaacaggaa cgctacatgc tttgaagaca 60 aacgaactga cggacacatg caggaggagc agcatgggaa ggtcatacct gtctgtcagg 120 atgagagtaa agaggcataa ggtcttcctg gtgtgcttac tggggatttg tgtggtttcc 180 ttccttcatt actacacagc cctgcacaat atttctctgc tgcaggagat ctcctctcca 240 tccagccatt tgaatactct gaagatgttg agaggtttct tctggaactt tccaactgat 300 gacatccctt tcaagcaaga ccgtcagaaa tccagccatc agaaggattt tgtcgacctg 360 ccagatcttc cagatgccaa acaggtcgtc acaaaccttc acaagcagat ctttgagctt 420 cgtgatgatt ctacaccatt ttttacccac accgagtctg gagcattgtg cttccatgag 480 gggactgatc tggctgcatt tgcatctcaa ggcaggttac tgaaacatta tgaggagaga 540 acccccctca aagatgattt aatcaacgca ggcaagaagg acgttcggtg tccctgtcgt 600 cagggttggc atggccctca atgtggcata cctactgttg tgtatcattc caatctccca 660 tcaaagtcga aagtcacacc cagaaaaatt ccacgtcggg tcatcaatgc cattaacatc 720 aaccacgagt ttgacctcct gcacacgcgc ttccatgaac ttgcagatgt cgtggacaca 780 tttttggttt gcgaatccaa ttttacagct tatggagacg caagaccttt gtacttaaag 840 catctgatcc taaatggaac atttgattac attaagcaca agattctcta tatcttcttg 900 gaccattttc ctgatggtgg tcgcatggat ggctggattg cggatgatta cctgcgcaca 960 tatttgacca aaaatggaat ggcaaggatt cagggcctca aaccagatga tgtgttcatt 1020 ttgaacgatg cagatgaaat tccttcacga gatggaattc tgttccttaa actctacgat 1080 ggatggactg aaccggtcgg gatccatttg cgtaaatcct tatatgggtt tttctggaga 1140 cagtatggaa cgcttaacgt cttatccgct tgcacggcag ctatgctttt taaggtttac 1200 aagggtgatg ggatttatct tcgacgccgg tcatattata ccatgtcggg atttcgggag 1260 tacgaaaatt ctactgggcg tattttgatt ccatgggcta ttggaagccc tgttcattat 1320 gctggatggc actgttcttg gtgtttcaaa ccagaaggga tttattacaa actcgtatca 1380 gcccagaatg gagactttcc acgttggggg gattatgggg agaaacggaa gttaagttat 1440 attaaagact taatacgcac agggggttgg tttgatgggt ctgaaccaga ctacccacca 1500 acagacccca aagagcatat gtatgctccc aaatacctgc tggacaacta tgacaaatat 1560 cactacttgc tggaaaaccc atatgcaaaa gggaaacgtt aatagataca ggagtgattc 1620 aaatgggtgg ttttaagccc atgctagatt ttgcatacag ctcataagat gtgcacaact 1680 ttcctatttt tcactgcgag tacaaagtgc aacagtcctc aggatagtgg ccatcagtca 1740 ggcatagagc ttcagaatgt caccgggact ggaaaccact gtgcagagat gtgtaaatgt 1800 tcatttcata tcccttctat aagtttattc acaataagtt ccttatgtta tgatgctgtt 1860 caaaaagtct atgcttcaaa tgtagcattt cgtttatcct gagaagtgcc ttttacagtg 1920 taaaaaaatt gtacaatgta ccgattgatc gactgatgaa acattgataa aaaaaaatct 1980 gaataatgtt cagtacataa ctccatcagc agttttgaaa atatgtaata ttgataaatt 2040 gcaagtcttt gtacagacgg taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa 2096 // |
|