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EBI DbfetchID BC095642; SV 1; linear; mRNA; STD; VRT; 2928 BP. XX AC BC095642; XX DT 10-MAY-2005 (Rel. 83, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Danio rerio UDP-N-acetyl-alpha-D-galactosamine: polypeptide DE N-acetylgalactosaminyltransferase 7, mRNA (cDNA clone MGC:112011 DE IMAGE:7407198), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2928 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2928 RG NIH MGC Project RA ; RT ; RL Submitted (06-MAY-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000000935; Danio_rerio. DR Ensembl-Gn; ENSDARG00000002305; Danio_rerio. DR Ensembl-Gn; ENSDARG00000022650; Danio_rerio. DR Ensembl-Gn; ENSDARG00000034181; Danio_rerio. DR Ensembl-Gn; ENSDARG00000038957; Danio_rerio. DR Ensembl-Gn; ENSDARG00000042468; Danio_rerio. DR Ensembl-Gn; ENSDARG00000057303; Danio_rerio. DR Ensembl-Gn; ENSDARG00000060871; Danio_rerio. DR Ensembl-Gn; ENSDARG00000061124; Danio_rerio. DR Ensembl-Gn; ENSDARG00000075333; Danio_rerio. DR Ensembl-Tr; ENSDART00000001053; Danio_rerio. DR Ensembl-Tr; ENSDART00000003666; Danio_rerio. DR Ensembl-Tr; ENSDART00000012385; Danio_rerio. DR Ensembl-Tr; ENSDART00000056869; Danio_rerio. DR Ensembl-Tr; ENSDART00000062269; Danio_rerio. DR Ensembl-Tr; ENSDART00000063081; Danio_rerio. DR Ensembl-Tr; ENSDART00000063412; Danio_rerio. DR Ensembl-Tr; ENSDART00000079928; Danio_rerio. DR Ensembl-Tr; ENSDART00000083605; Danio_rerio. DR Ensembl-Tr; ENSDART00000086220; Danio_rerio. DR Ensembl-Tr; ENSDART00000086823; Danio_rerio. DR Ensembl-Tr; ENSDART00000105490; Danio_rerio. DR Ensembl-Tr; ENSDART00000114903; Danio_rerio. DR ImaGenes; IMAGp998C0415608Q. DR ImaGenes; IRAKp961G13224Q. DR ImaGenes; IRBOp991B0665D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: John Ngai, Nancy Freeman, NIDCD CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 224 Row: g Column: 13 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 63100868. XX FH Key Location/Qualifiers FH FT source 1..2928 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_14" FT /clone="MGC:112011 IMAGE:7407198" FT /tissue_type="Olfactory epithelium" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2928 FT /gene="galnt7" FT /note="synonym: zgc:112011" FT CDS 140..2098 FT /codon_start=1 FT /gene="galnt7" FT /product="UDP-N-acetyl-alpha-D-galactosamine: polypeptide FT N-acetylgalactosaminyltransferase 7" FT /db_xref="GOA:Q502M4" FT /db_xref="InterPro:IPR000772" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR008997" FT /db_xref="UniProtKB/TrEMBL:Q502M4" FT /db_xref="ZFIN:ZDB-GENE-050522-284" FT /protein_id="AAH95642.1" FT /translation="MRLKVGFILRSLLVISTFLGLVLLWSSLTPKAGDDNPFAGVMARE FT ADKLPQPNLPNNNVADQFKPVVPWPHVEGVEVDLESIRQKNVDNPNPAFKAQNQQNVIQ FT KQYITFKPHTNMYSDPVLNKGTLGNFEPKEPEPHGVQGGPGEGSKPFVLGPEYKDAVQA FT SIKEFGFNMVASDMISLDRTVGDLRHEECKYWNYDENLLTSSVIIVFHNEGWSTLMRTV FT HSVIKRTPRKYLAEIVMIDDFSNKAHLKERLEEYIKQWNGLVKVFRNEKREGLIQARSI FT GARKATLGKVLIYLDAHCEVGVNWYAPLVAPISKDRTVCTVPLIDYIDGNDYTIEPQQG FT GDEDGLARGAWDWSLLWKRVPLSSREKAKRKHKTEPYRSPAMAGGLFAIEREFFFELGL FT YDPGLQIWGGENFEISYKIWQCGGQLLFVPCSRVGHIYRLQGWQGNPPPAHVGSSPTLK FT NYVRVVEVWWDDYKDYFYASRPETLTLAYGDISTLKKFREEHRCKSFKWFMEEIAYDIP FT LHYPLPPKNVEWGEIRGYETSYCIDSMGHTNGGNVEIGPCHRMGGNQLFRINEANQLMQ FT YDQCLTKGGDGSAVIITHCNLNEHTEWKYFKDLHRFTHVPTGKCLDRSDVLHKVYIADC FT DNSKSSQKWEMNNIVAV" XX SQ Sequence 2928 BP; 837 A; 586 C; 739 G; 766 T; 0 other; agagagaaag aaaacgagag tgagaagaag gagggaggga ctcgatgtgg ccatacaggc 60 tgcggagtgt ttatttattt ttgcaagctc acatttttct ttctgttttc ttatttttca 120 actgatttcc tcccccaaaa tgaggttaaa ggttggattc atccttcgaa gtttgctggt 180 catcagcaca tttttggggc tggttttgct ttggtcttct ttgacaccga aggctggaga 240 cgataacccg tttgctggtg taatggcaag agaggctgat aaactcccgc agcccaacct 300 tcccaataac aacgttgcag accagtttaa gccagttgtt ccttggcccc atgtcgaagg 360 agttgaggtc gatctagagt ccatccgcca gaagaatgtg gacaacccaa acccagcatt 420 caaagcccaa aaccagcaga atgtcatcca gaagcaatat atcactttta aaccccacac 480 caatatgtac agtgatcctg ttttgaacaa agggactctg ggcaactttg agccgaaaga 540 acctgagcct catggggtcc agggcggacc gggagagggc agtaaaccgt tcgttctggg 600 accagagtac aaagatgcgg ttcaagccag catcaaggaa tttggcttta atatggtagc 660 cagtgacatg atctctctgg atcgaactgt tggtgacttg cgtcatgaag agtgtaaata 720 ctggaactat gatgaaaacc tcctcacctc cagtgtgatc atagtctttc ataatgaggg 780 ctggtccacc ctgatgagga cggtgcacag tgtcatcaaa agaaccccaa ggaaatacct 840 ggctgagatc gtcatgattg atgacttcag taacaaagct caccttaaag agcggctgga 900 ggagtacata aaacaatgga acgggttggt caaagtgttc cgcaatgaga agagagaggg 960 tctgatccag gccaggagca taggagcccg caaagccact ttaggaaagg tgctgatcta 1020 cctggatgca cattgtgagg tcggagtgaa ctggtatgcc ccgctggtgg cccccatttc 1080 aaaagacaga acggtctgca cagtaccgtt gatagattac atagacggca atgattatac 1140 catagagcca caacagggtg gggatgagga cggtctggcg cgaggcgctt gggactggag 1200 cctcctgtgg aaaagggttc ctctaagcag cagggagaag gctaagagaa agcataagac 1260 cgagccctat cggtctcctg ccatggctgg agggctgttt gcaattgaga gagaattctt 1320 ctttgagttg ggtctttatg atccaggcct tcagatctgg ggaggtgaaa actttgagat 1380 ctcatacaag atatggcagt gcggtgggca gcttctgttc gtgccatgtt cacgggtggg 1440 gcacatctac cgtctgcagg gctggcaggg aaacccacct cctgctcatg tcggctcatc 1500 cccaacactt aagaactatg tgcgggtggt ggaggtatgg tgggatgatt acaaggacta 1560 tttctacgct agtcgaccgg agacactcac tctggcctac ggggacatca gcaccttgaa 1620 aaagttcaga gaggagcatc ggtgcaagag cttcaagtgg ttcatggagg agattgccta 1680 tgacatccct ctgcattacc cattgcctcc aaaaaatgtt gaatggggag agattcgtgg 1740 atacgagacc agctactgca ttgacagcat gggccacact aatggtggca atgtggagat 1800 tgggccttgt catagaatgg gtggcaatca gctcttcaga attaatgaag ctaaccagct 1860 gatgcagtac gaccagtgcc tgacaaaggg gggagatgga tctgctgtca tcataacaca 1920 ctgtaacttg aacgagcaca cagagtggaa atattttaag gatctacacc gattcacaca 1980 tgtacctaca ggaaaatgct tggatcgctc tgacgtcctg cacaaggtct atatagcaga 2040 ctgtgacaac agtaagagct cgcagaagtg ggagatgaac aacatcgtgg cagtataaga 2100 gccatgctca aagtgcttca aggataaaca ctgactacag caacaggttt tgccagtata 2160 catgtgacta atgaagttct agtcatcgcc agaataactc tgaactttga tcataaactt 2220 tttttgtttc ctccattgaa gactgtttac atcgggttgt ccccacagtg tccatcgcat 2280 gggtctttca ttggaatcct ggattggagg gggtctacct aacagaatgt gttttccccc 2340 ctttcagaga atgtgtgctg agatcaatga tctaatacca cttttgttgc tgctccttta 2400 taaagtacag gttgtccatc aagtactggg atgcatatat ttttttaaca ctggaacttt 2460 gttgtgtttg agatgacaac ctgccacttg aactattttt gtctttggca cagtggcaca 2520 tttttcggcc atatttatgg aaaaagaatg ggagttgaga gtaaagggaa acggggacaa 2580 agggttagca atgaaaaaat acaattattt ttgtctgcag cataaaatgt ttgcttggtt 2640 gggggaatag atgtttatta ctttgtgaaa atcagtgatt gattatagta ctcttggcca 2700 aaaaaaatcg agtaaatgga gcaaagttct gatttaaggg caagattgat tgcaatgtgt 2760 acattttttt gtttgttttg tacaatgtaa atacgatcat ttataaatta acattttgag 2820 atatggtggg cttcccaatg aaggtgtaaa tatatctaac ttatactggc tgttttctca 2880 agaaaataaa tgaaacattt ttactggtca aaaaaaaaaa aaaaaaaa 2928 // |
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