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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC093183; SV 1; linear; mRNA; STD; VRT; 1598 BP.
XX
AC   BC093183;
XX
DT   06-APR-2005 (Rel. 83, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 5)
XX
DE   Danio rerio beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I),
DE   mRNA (cDNA clone MGC:112070 IMAGE:7414294), complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1598
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1598
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000001939; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000109696; Danio_rerio.
DR   ImaGenes; IMAGp998J2015626Q.
DR   ImaGenes; IRAKp961L11224Q.
DR   ImaGenes; IRBOp991D0466D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: John Postlethwait, University of Oregon
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 224 Row: l Column: 11
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 62205376.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1598
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_5"
FT                   /clone="MGC:112070 IMAGE:7414294"
FT                   /tissue_type="Ovary"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1598
FT                   /gene="b3gat3"
FT                   /note="synonyms: CHUNP6865, zgc:112070, wu:fe01c06"
FT   CDS             226..1212
FT                   /codon_start=1
FT                   /gene="b3gat3"
FT                   /product="beta-1,3-glucuronyltransferase 3
FT                   (glucuronosyltransferase I)"
FT                   /db_xref="GOA:Q567G3"
FT                   /db_xref="InterPro:IPR005027"
FT                   /db_xref="UniProtKB/TrEMBL:Q567G3"
FT                   /db_xref="ZFIN:ZDB-GENE-020419-3"
FT                   /protein_id="AAH93183.1"
FT                   /translation="MRLKLKTVFVLYFMVSLFGLLYALMQLGQRCDCRDHEQSKDQQIS
FT                   QLKGELQKLQEHIKTSELSKKTDVPRIYVITPTYSRLVQKAELTRLAHTFLHVPQLHWI
FT                   VVEDAPQQTQLVSDFLSASGLTYTHLNKLTPKERKLQEGDPNWLKPRGAEQRNEGLRWL
FT                   RWMGSTVHGKEAAALEEAVVYFADDDNTYSLQLFEEMRYTYRVSVWPVGLVGGMKFERP
FT                   VVEDGKVVRFHTGWRPNRPFPIDMAGFAVSLRLVLTNKEALFDGDAQMGFLESSFLQHL
FT                   VTMDDLEPKADLCTKVLVWHTRTEKPKMKREEALLKQGMGSDPDVEV"
XX
SQ   Sequence 1598 BP; 443 A; 358 C; 410 G; 387 T; 0 other;
     atgcagtctt tgtaaccgta aatgattaca aactaacaga gcgaactaaa aatcaagata        60
     gagtcacagg atgtacttta ctttaggtaa tgttagcggt atctattgtc attctcccca       120
     agctgcagtc gtgctcgtcg taatgggttt ccatgggcgg agtgtgtaaa aaccaagggt       180
     ctccttcagt ctcggctcca gcatcagcag caggtcatca tgaggatgag actgaagctg       240
     aagacagtgt ttgtcctgta cttcatggtg tctctgtttg ggctcctgta cgcgctgatg       300
     cagctcggtc agcgctgtga ctgtcgagat catgagcaat ctaaagatca gcagatctct       360
     cagctgaaag gggaactgca gaagctccag gagcacatca aaacatcaga gctgtccaag       420
     aagacggatg tgcccagaat atacgtcata acacccacat attctagact ggtgcagaaa       480
     gctgagctca ctcgtctagc tcacacattc ctccacgttc cccagctgca ctggatcgtg       540
     gtggaagacg ctcctcagca aactcagctc gtctccgact tcctgtctgc ttccggcttg       600
     acctacactc atctaaacaa gctgacgccc aaggagagga agctgcagga gggagacccc       660
     aactggctga agccccgggg ggctgagcag aggaacgagg gtctgcgctg gctcagatgg       720
     atgggttcta cagttcacgg gaaagaagca gctgcccttg aagaggccgt ggtttacttt       780
     gctgatgatg acaacacgta cagcctacag ctttttgaag agatgcgcta tacttatcgt       840
     gtgtcagtgt ggcctgtggg tctggtgggt gggatgaagt ttgagcggcc cgtggtggag       900
     gatgggaagg ttgtgcgttt ccacactggc tggcgtccca atcggccctt ccctatcgac       960
     atggctggat ttgcagtgtc cctgaggctg gtactgacca ataaggaagc tctgtttgac      1020
     ggtgacgctc agatgggctt cctggaaagc agtttccttc agcacctggt cactatggat      1080
     gaccttgaac ccaaagcaga cctgtgcacc aaggtgctgg tttggcacac ccggactgag      1140
     aagccaaaga tgaagagaga agaagctttg ctgaagcagg ggatgggctc tgatccggat      1200
     gtggaggtgt gagcagaacg tgcccgaact tcaccaaaca tccacacttc cattgtgcca      1260
     aacacattct cttatttatc tggcaagagc tgaagcttgt aatgtagaca ctataaatgt      1320
     gaactctggc ctacaaacca aagacatgag gaatgaggaa agaaaacgat gaatgcatag      1380
     ataagaaaag caggagatgc acacagaaca acccgtgact taaatgcaaa tggcttgcta      1440
     gaaatcattt tacatttcag aatccatgct tatcatctga atagtattta aataatttta      1500
     caggcacaca agttgagctt gtgtcgatgt ttttagaaat gtataaaagt ttgcctggat      1560
     tatattcatt actcattgtt aaaaaaaaaa aaaaaaaa                              1598
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