 |
|
EBI DbfetchID BC093107; SV 1; linear; mRNA; STD; VRT; 1237 BP. XX AC BC093107; XX DT 06-APR-2005 (Rel. 83, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 5) XX DE Danio rerio UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide DE 1, mRNA (cDNA clone MGC:111810 IMAGE:7429189), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1237 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1237 RG NIH MGC Project RA ; RT ; RL Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000002634; Danio_rerio. DR Ensembl-Tr; ENSDART00000048921; Danio_rerio. DR ImaGenes; IMAGp998G1115665Q. DR ImaGenes; IRAKp961D06226Q. DR ImaGenes; IRBOp991H1167D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: William S. Talbot, Stanford University CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 226 Row: d Column: 6 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62205293. XX FH Key Location/Qualifiers FH FT source 1..1237 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_19" FT /clone="MGC:111810 IMAGE:7429189" FT /tissue_type="Larvae, whole, 5 day old, mixed wild type, FT 650 pooled" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1237 FT /gene="b4galt1" FT /note="synonym: zgc:111810" FT CDS 167..811 FT /codon_start=1 FT /gene="b4galt1" FT /product="UDP-Gal:betaGlcNAc beta FT 1,4-galactosyltransferase, polypeptide 1" FT /db_xref="GOA:Q567N4" FT /db_xref="InterPro:IPR003859" FT /db_xref="UniProtKB/TrEMBL:Q567N4" FT /db_xref="ZFIN:ZDB-GENE-050417-236" FT /protein_id="AAH93107.1" FT /translation="MSESVGFFTKACVVLVLLCGLHLIVALIFYLSESPLAKFRNYRHI FT SFISDMVNSQTHGELGQADNETLDVAVYKRIYNNETVIIGDVEKPAEVLESCPETSPLL FT VGQLRVEFSTPVDFNLVRQGNKHLTMGGRYTPTKCVALQKVAMITPYRNREEHLKYWLY FT YLHPILKRQLLDYGIYIIEQDGENTPNKTLKSLTICILGLSLRISVTLMVE" XX SQ Sequence 1237 BP; 370 A; 229 C; 272 G; 366 T; 0 other; atcttcatca atgccggaaa aactggacgt ggacggacgc gatcgctatc acaaaaactt 60 tctaaaggga ctacgctggt catcccatga aggaacggac agatgtgtct tagttttagg 120 actttttatt cctcgtgaat gaagcggtct ctgtagtttt gcgagaatgt cggagtcggt 180 gggattcttc actaaagcat gcgtcgtgct cgtgctgctc tgcgggcttc acctcatcgt 240 ggcactgatt ttctatttat cagagtcgcc tttagctaaa tttaggaatt atcgacacat 300 ttcatttatc tctgatatgg ttaattcaca aactcacgga gaattgggac aggctgacaa 360 tgaaacactt gacgtagctg tatataaacg tatctataat aacgagactg tcattattgg 420 tgacgtagag aaacctgcag aagtactgga gtcgtgtcct gaaacgtcgc cacttttggt 480 gggtcaactg cgagttgaat tttcgacccc ggtggatttt aatttggtgc gtcaaggcaa 540 taagcatctg acgatgggcg gcaggtatac acccaccaaa tgtgtggctc tgcaaaaagt 600 ggcgatgatc accccataca gaaacagaga agaacacctc aaatactggc tttactacct 660 tcaccctatc ttaaagagac agctgctgga ttatgggatt tatatcatag aacaggatgg 720 agagaacact ccaaacaaaa ctctaaaatc gctgacaata tgcatccttg ggttgagttt 780 gagaatttcg gttacactga tggtagaata attttaatat caaatggtac tgaaactttt 840 ctaaagttat ttttgttatg tttttaaaga aaatattttg gatttggtgg aggttgagtt 900 gtgtatgcct ttatttcaca ccatgggtct gttccatgaa gccagattaa caggctggcc 960 agttgggttt cagtttagtt tgcacaaatc ttaggtttta gataacatca aagcagctta 1020 atcacttttt gttgtcatgg tgttatggag cagttgaact aagctgatct accttcatgg 1080 tatctaagat aagagcaaac taaactgaaa cttaactcgc tagcgagcta atccggcttc 1140 atggtacaag ccccagatca gtgaaaccta ttgtttgtta cagatatcat ggctgtatgt 1200 caataaataa aggaagaatt aaaaaaaaaa aaaaaaa 1237 // |
|