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EBI DbfetchID BC092934; SV 1; linear; mRNA; STD; VRT; 1592 BP. XX AC BC092934; XX DT 06-APR-2005 (Rel. 83, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 5) XX DE Danio rerio xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 DE (galactosyltransferase I), mRNA (cDNA clone MGC:110571 IMAGE:7159419), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1592 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1592 RG NIH MGC Project RA ; RT ; RL Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000021899; Danio_rerio. DR Ensembl-Gn; ENSDARG00000032768; Danio_rerio. DR Ensembl-Gn; ENSDARG00000068064; Danio_rerio. DR Ensembl-Gn; ENSDARG00000078464; Danio_rerio. DR Ensembl-Tr; ENSDART00000037999; Danio_rerio. DR Ensembl-Tr; ENSDART00000048293; Danio_rerio. DR Ensembl-Tr; ENSDART00000098209; Danio_rerio. DR Ensembl-Tr; ENSDART00000108760; Danio_rerio. DR ImaGenes; IMAGp958C013339Q. DR ImaGenes; IRALp962C1567Q. DR ImaGenes; IRBVp5006E1110D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Genome Institute of Singapore CC cDNA Library Preparation: S. Mathavan, Chia-Lin Wei, and Yijun CC Ruan, Genome Institute of Singapore CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 67 Row: c Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62202334. XX FH Key Location/Qualifiers FH FT source 1..1592 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="Singapore local strain" FT /mol_type="mRNA" FT /clone_lib="GISZF001_ra" FT /clone="MGC:110571 IMAGE:7159419" FT /tissue_type="Embryo, 7 different stages (from just FT fertilized embryos to 72 hours just hatched baby fish)" FT /note="Vector: pDNR-LIB" FT /db_xref="taxon:7955" FT gene 1..1592 FT /gene="b4galt7" FT /note="synonym: zgc:110571" FT CDS 458..1411 FT /codon_start=1 FT /gene="b4galt7" FT /product="xylosylprotein beta 1,4-galactosyltransferase, FT polypeptide 7 (galactosyltransferase I)" FT /db_xref="GOA:Q568B5" FT /db_xref="InterPro:IPR003859" FT /db_xref="UniProtKB/TrEMBL:Q568B5" FT /db_xref="ZFIN:ZDB-GENE-040727-3" FT /protein_id="AAH92934.1" FT /translation="MMYSSRRKPVLYFKDDRSFLSRNCTVWKLFGLCMVFVFGSLLWVQ FT LTCTGDMSQTAGYSHLPQQPCPIDKQSSHVDDPSWGPHKMALIVPFRERFEELLVFVPY FT MHAFLNKKKIRHKIFIINQVDHFRFNRASLINVGFMESGNDTDYIAMHDVDLLPQNEDL FT NYGFPVDGPFHVASPELHPLYHYKTYVGGILLLTKKHYLACNGMSNRFWGWGREDDEFF FT RRLKAANLELFRPTGITTGTKTFRHIHDPAWRKRDQKRIAAQKQEQFKVDPEGGLSNLR FT YKVESRKEVSISGAPCTVINTFVECDLNQTPWCQFS" XX SQ Sequence 1592 BP; 479 A; 320 C; 365 G; 428 T; 0 other; gttgttacat atttatcggc aatgacgcgt cgtaataaat aaacagacac tatatactat 60 atctgggcct tttaacacac gtttgattgg tcattctcgt ggacgcgttt tcctaaaatc 120 agctcttgcc gtctgcttgt tatttgtcgt accgttatga gtgacgtgta acttaacgcg 180 aaattcttca caaataacag atctgaaaca ggtttataat gcgcttaagc gtgttaaagt 240 ggttgtgtct actatgaaag aacacattca agccgtccgc tgaggatgtg ataaattgca 300 gctcgtttat gatggaaaga gacaaaagac agtgtcataa acaggaattg gattttaaca 360 tgtaacggta gatgactgag gctgaatatc agtgaggata tttggatcag cttgcttttc 420 ttcagcgtgg tacggtgttg ctcagaaagg cacaaagatg atgtactctt cacggaggaa 480 acctgtgctg tatttcaaag atgacagaag ttttctgtcg aggaactgca ctgtatggaa 540 gctgtttggc ctctgcatgg tgtttgtttt tgggtccctt ctctgggtgc agttgacgtg 600 tacaggagac atgagccaga ctgctggata cagccatctc cctcaacagc cctgtccaat 660 agacaaacag tcgtcccatg ttgatgatcc ttcctggggc cctcataaaa tggccctcat 720 tgttccattc agagagcgct ttgaagagct gcttgtgttt gtcccgtata tgcacgcttt 780 cctcaacaag aagaaaatac gccataaaat atttattata aaccaagtag atcactttcg 840 gttcaatcgt gcctctctta ttaacgttgg cttcatggaa agtgggaatg acacagacta 900 cattgcaatg catgatgtgg acttgttgcc tcaaaacgag gatctgaact atgggtttcc 960 agtagacggg cccttccacg tggcctcacc agagcttcat cctttatatc actataagac 1020 gtatgttgga ggaatcctgc tgctcactaa gaaacattat ctggcgtgca acgggatgtc 1080 aaaccgcttt tggggatggg gaagagaaga tgacgagttt ttcaggagac tgaaagcagc 1140 taatcttgag ctttttagac caacaggtat tactacagga actaaaacat ttagacacat 1200 ccatgatcca gcctggagga aaagagacca gaagcggatt gctgcacaaa aacaggagca 1260 gtttaaggtg gaccctgagg gtggcctgag taaccttcgc tacaaggtgg agtccagaaa 1320 agaagtgtct atcagtggag ctccatgtac tgtgatcaac acctttgtgg agtgtgacct 1380 caaccagacc ccatggtgcc agttcagcta ataatagttg ataatgcata attcacttaa 1440 tgcttgaaca ggacctggga agccagaatg atacggattc tccttctgtg gtgcaaggaa 1500 agctttcaca gattatcagt gccagtcaca cttgaaaaaa aaaaaaaaca gatcgtcgaa 1560 ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa 1592 // |
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