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EBI DbfetchID BC092849; SV 1; linear; mRNA; STD; VRT; 1638 BP. XX AC BC092849; XX DT 06-APR-2005 (Rel. 83, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 5) XX DE Danio rerio alkaline ceramidase 1, mRNA (cDNA clone MGC:110285 DE IMAGE:7400329), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1638 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1638 RG NIH MGC Project RA ; RT ; RL Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000002768; Danio_rerio. DR Ensembl-Gn; ENSDARG00000010347; Danio_rerio. DR Ensembl-Gn; ENSDARG00000027523; Danio_rerio. DR Ensembl-Gn; ENSDARG00000059340; Danio_rerio. DR Ensembl-Gn; ENSDARG00000060004; Danio_rerio. DR Ensembl-Gn; ENSDARG00000074740; Danio_rerio. DR Ensembl-Gn; ENSDARG00000079610; Danio_rerio. DR Ensembl-Gn; ENSDARG00000079616; Danio_rerio. DR Ensembl-Tr; ENSDART00000010144; Danio_rerio. DR Ensembl-Tr; ENSDART00000023797; Danio_rerio. DR Ensembl-Tr; ENSDART00000063619; Danio_rerio. DR Ensembl-Tr; ENSDART00000082438; Danio_rerio. DR Ensembl-Tr; ENSDART00000084055; Danio_rerio. DR Ensembl-Tr; ENSDART00000110495; Danio_rerio. DR Ensembl-Tr; ENSDART00000113191; Danio_rerio. DR Ensembl-Tr; ENSDART00000113237; Danio_rerio. DR Ensembl-Tr; ENSDART00000113630; Danio_rerio. DR Ensembl-Tr; ENSDART00000114624; Danio_rerio. DR ImaGenes; IMAGp998D2315590Q. DR ImaGenes; IRAKp961K18211Q. DR ImaGenes; IRBOp991C0161D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: John Ngai, Nancy Freeman, NIDCD CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 211 Row: k Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62205170. XX FH Key Location/Qualifiers FH FT source 1..1638 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_14" FT /clone="MGC:110285 IMAGE:7400329" FT /tissue_type="Olfactory epithelium" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1638 FT /gene="acer1" FT /gene_synonym="asah3" FT /gene_synonym="zgc:110285" FT CDS 181..981 FT /codon_start=1 FT /gene="acer1" FT /gene_synonym="asah3" FT /gene_synonym="zgc:110285" FT /product="alkaline ceramidase 1" FT /db_xref="GOA:Q568I2" FT /db_xref="InterPro:IPR008901" FT /db_xref="UniProtKB/Swiss-Prot:Q568I2" FT /db_xref="ZFIN:ZDB-GENE-050417-70" FT /protein_id="AAH92849.1" FT /translation="MAGVFSYESSEVDWCEDNYKHSENVVEYFNTMSSFIFFVISPIML FT YLLHPYAKERNLAVHLVWIMMVFVGIFSMYFHMTLSFMGQMLDELSILWVLAIGYSLWF FT PRKHFPSFVKDRTSFARLVLTITIISTLSSFVKPTANAYALNCFAIHILYSLFVELKSC FT TDERVLRLAWASIGLWVLAISCWISDRFGCSFWQKLDFCYLHGIWHILIVMATAYASTL FT IAYLDASQEIPYSLPDLQYWPRNNWAIGLPYIVLKGTNTTRKTC" XX SQ Sequence 1638 BP; 460 A; 330 C; 336 G; 512 T; 0 other; tcaattgaga aatgccaccg ttcgctcggt ttcacctgaa ccctccacag gtgatgtcag 60 agaccgggac ccgagtaaca ggatcgggga catttctcct ctacttaaac ctgacacatg 120 gagcgctcgg cggtggatgc gttttccaga ggtatcccct catttccatc ctttgtcaaa 180 atggcaggcg tgttttccta cgagagctct gaggtggact ggtgtgagga caactataaa 240 cattcggaga atgttgtgga atatttcaac acgatgagca gtttcatctt ctttgtgatc 300 tcacctataa tgctgtacct gctacacccg tatgccaagg aaaggaacct ggctgtgcat 360 ctggtctgga tcatgatggt gtttgtaggt atcttctcca tgtatttcca catgactctg 420 agttttatgg gccagatgct ggatgagctg tccatcctgt gggttttggc tattggttac 480 tcgctgtggt ttccccgcaa acacttccct tccttcgtta aggacaggac atctttcgct 540 cgtttggtgc tgaccatcac tatcataagt actctgtcat cttttgtcaa acctacagcc 600 aatgcctacg ctctcaactg cttcgccatc catatcctct actctctgtt tgtggagtta 660 aagagttgca cagatgagcg agtgctgcgt ctggcctggg cctccattgg cctgtgggtt 720 ctggccatct catgctggat tagcgatcgc tttggctgca gcttctggca gaaactggac 780 ttctgttatc tgcacggtat ctggcacatt ttgattgtaa tggccactgc ttatgctagc 840 actttgattg catacctgga tgctagtcag gagatccctt attccctccc ggacttgcag 900 tactggcccc ggaataactg ggccattggg ctgccataca tcgtcctcaa aggcaccaat 960 acgacccgga aaacatgcta gcaaacatga acagatctca tatttaaagc tgactggtgt 1020 aactctgatc tgggaccagc cttcaacttt caaaaatggt gaataattga tgtgagaaag 1080 agctgaatct ctgtgaggac tgaagtgaaa tgaatgttgc atgttatgat tgtttcttgt 1140 atttctcaca gaacctaaat gtgtatgtgt gattttctcc ttttgagact gtattttcat 1200 tacaatcagc atgtggttgt tacgtggaca tgaatatttg cactgtagtg acagaattga 1260 atgtatgtgc aatacattct gtagtttact tgatttacaa atcagaggct tcaatttgtc 1320 atcggcacta cttgattctt gggtgaaact tataatgtta tattgacagt cggtttgata 1380 tatgactcat gaaattaata ttctcttaac aatgatgcaa acgtttgttc acaaatgtaa 1440 taactgggat tgtgaacatt tgttgtgcga tttttaaatc ttaattcatt ttactgcatt 1500 ataaataata aatataatta gataataatt atatttatta tttaaatatt gtataaatct 1560 ctatatatct acaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1620 aaaaaaaaaa aaaaaaaa 1638 // |
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