EBI Dbfetch

ID   BC090692; SV 1; linear; mRNA; STD; VRT; 2845 BP.
XX
AC   BC090692;
XX
DT   02-MAR-2005 (Rel. 83, Created)
DT   27-JUN-2007 (Rel. 92, Last updated, Version 6)
XX
DE   Danio rerio WD repeat domain 51B, like, mRNA (cDNA clone MGC:113219
DE   IMAGE:7139488), complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-2845
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2845
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (28-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   ImaGenes; IMAGp958D143287Q.
DR   ImaGenes; IRALp962M2264Q.
DR   ImaGenes; IRBVp5006A088D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Genome Institute of Singapore
CC   cDNA Library Preparation: S. Mathavan, Chia-Lin Wei, and Yijun
CC   Ruan, Genome Institute of Singapore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAL Plate: 64 Row: m Column: 22
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 60416046.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2845
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /strain="Singapore local strain"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GISZF001_ra"
FT                   /clone="MGC:113219 IMAGE:7139488"
FT                   /tissue_type="Embryo, 7 different stages (from just
FT                   fertilized embryos to 72 hours just hatched baby fish)"
FT                   /note="Vector: pDNR-LIB"
FT                   /db_xref="taxon:7955"
FT   gene            1..2845
FT                   /gene="wdr51bl"
FT                   /note="synonyms: im:7139488, Galnt4, zgc:113219"
FT   CDS             298..2046
FT                   /codon_start=1
FT                   /gene="wdr51bl"
FT                   /product="WD repeat domain 51B, like"
FT                   /db_xref="GOA:Q5CZV4"
FT                   /db_xref="InterPro:IPR000772"
FT                   /db_xref="UniProtKB/TrEMBL:Q5CZV4"
FT                   /db_xref="ZFIN:ZDB-GENE-050306-41"
FT                   /protein_id="AAH90692.1"
FT                   /translation="MKIRWSRKVAVLAKVCFLFSLLWLFCLLIVRSSPPSLADNDGRRD
FT                   ILARDLPPIEEEEEDSENLLRPVYEKLPPDSNAPGEYGRATRLTLTSEEKKEEEASVER
FT                   CAINIFISDKISLHRHIQDNRMHECKAKKYNIRRLPTTSVVIAFYNEAWSTLLRTIHSV
FT                   LETTPAVLLKDIILVDDFSDRGYLKSQLAQYISNLERVRLIRTKKREGLVRARLIGATY
FT                   ATGSVLTFLDCHCECVPGWIEPLLERIAENETTIICPVIDTIDWNTFEFYMQTEEPMVG
FT                   GFDWRLTFQWHAVPEIDRKIRKSRIDPIRSPTMAGGLFAVSKAYFEYLGTYDMGMEVWG
FT                   GENLELSFRVWQCGGSLEIHPCSHVGHVFPKKAPYARSNFLQNTVRAAEVWMDTYKQHF
FT                   YNRNPPARKESYGDISERIVLRNRLQCKSFEWYLQNVYPGLHVPEDRPGWHGAVRSAGI
FT                   HSECLDYNAPDHNPTGAHLSLFGCHGQGGNQYFEYTSQREIRFNSVTELCAEVQDGMTH
FT                   IGMKHCPQDGVPKPPSIIWQFREDGSIFHPHSNMCITSYRTEEGRADIQMRSCSTGDKH
FT                   QRWSFE"
XX
SQ   Sequence 2845 BP; 801 A; 655 C; 703 G; 686 T; 0 other;
     ggggcctggg ctgcgctgca gtgagcacgc gaatccgtga catttacttc agccatgtaa        60
     cccgtcagag agcgctcgct cgtaaggact cgagcttctt aaagcgatta acgcgagcgt       120
     ttgtacgggt ttgttgtttg aggaggagga ggaggaggcg gaggaggatg tgtgtttgct       180
     gacagcggca cgagctgctc ctcagcgtta tatctgtccg agagcacggc atgaagagat       240
     caggttggat cgtgatgctc tttgactggt gctgttagtg gtgctggctg ccaggacatg       300
     aagatccgct ggtcaaggaa ggtggctgtc ctggccaagg tctgcttcct cttttctcta       360
     ctatggctct tctgcctcct catagtgcgt tcttcacctc catctctggc tgataacgat       420
     ggtcggcgtg acatcctggc ccgtgacctt ccacccattg aggaggaaga ggaggactct       480
     gaaaaccttc tgcggcctgt ttatgaaaag ctaccgccag actccaacgc tcctggagaa       540
     tacggacgag ccactcgact gaccctcact tctgaggaaa agaaagagga ggaggctagc       600
     gttgagcgct gcgccatcaa tatcttcatc agcgacaaga tatctcttca tcgccatatt       660
     caagacaaca ggatgcatga atgcaaagca aagaagtaca acatccgtcg tctcccgaca       720
     acatcagtgg ttatagcatt ttacaatgag gcctggtcta ctttactgag aaccatccac       780
     agtgtgctgg agaccacacc ggccgtcctg ctgaaggaca tcattctagt tgacgacttc       840
     agcgatagag gttatctgaa gtcacagctg gcacagtata tcagtaacct ggagcgtgtg       900
     cgtctcattc ggacaaaaaa aagagaaggt ctggttaggg cacggctcat tggcgccacc       960
     tacgctacag gaagcgtgct caccttcctg gactgccact gcgagtgtgt gccaggctgg      1020
     atcgagccac tgctggaaag aattgcagag aatgagacca ccataatttg tccagtaatc      1080
     gacactattg actggaacac atttgagttc tacatgcaga cagaagagcc gatggtgggc      1140
     ggttttgact ggaggttgac atttcagtgg catgcagtgc ctgaaattga tcgcaagata      1200
     cgcaaatcca gaattgaccc cattaggtct cccactatgg caggaggcct gtttgccgtc      1260
     agcaaggcct actttgagta tcttggcact tatgacatgg gcatggaggt ctggggagga      1320
     gagaatctgg aactttcttt ccgggtatgg cagtgcggag ggtctttaga aatccaccca      1380
     tgctcccatg tgggtcatgt gtttcccaaa aaagcacctt atgctcgatc aaacttcctt      1440
     caaaacacag tccgagctgc agaagtatgg atggacacat acaagcagca cttctacaac      1500
     agaaaccctc cagcacgcaa ggaatcgtat ggggatatat cagaaaggat tgtcctacga      1560
     aatcggcttc agtgtaagag ctttgagtgg tacctgcaga acgtttaccc aggactgcat      1620
     gtgccagagg acaggcctgg ctggcacgga gcggttcgaa gtgctggaat ccactctgaa      1680
     tgtctggatt acaacgcccc agaccacaac cccacaggag ctcacctgtc cctgtttgga      1740
     tgccatggtc agggcggtaa tcagtacttt gagtacacat ctcaaaggga gattcgcttt      1800
     aactccgtga ccgagctgtg cgctgaagtt caagatggaa tgacacacat cggcatgaag      1860
     cattgtccgc aagacggcgt tcccaaacct cccagcatca tatggcagtt cagagaagac      1920
     ggcagcatat ttcaccctca ttcaaacatg tgtatcacct catatcgcac tgaagagggc      1980
     cgtgcagata tccaaatgag aagctgctct actggagaca aacaccagcg atggagcttc      2040
     gagtgatttt taaacaattc taaaagaaaa tggcattaaa aagaaaccga gacctggcat      2100
     ccttcatgca gtgcctttgc caaccaaagt ggacacattt gtagtgccaa ttcttttgtt      2160
     agaggtgttg ctatcataag tccgaagtgc atattcaagc tactgcagtc aacgtttaat      2220
     tgcgattaat catatccaaa aaaaaggttt gcattcatat aaatgccagg acacaccaag      2280
     ctgatgccaa acaactagtg caaactgtga ttttggtagt tgtggttctg tctggaccaa      2340
     aaaagttgcc cgtgaaacac accaaacaga cgaaagctga ctgaaacgag agtgtgtgtt      2400
     ctgcgtagga ggacatatct ttccgcactt gtgggtggca gtatctgatg tgttcgagca      2460
     aagcattaac aaagcagcgt ttagtagcat tatcacagta attgtcactc accatggagg      2520
     gattcacacc agcaagtatg tctgataatc taataattca tatcgtttgc aaatagtaga      2580
     gacaaatatg tgaactgccc taaccagtca gaacgctaag ccaattgtga aacatctacg      2640
     agctccaatg agaggcgacg agtggaacag accaaaccaa ctagccggac tgacaaatcc      2700
     caatggccga cagtcagctt ggtgtgtcac ggacttaata tgtgtgcctg tactgtgtat      2760
     atttattatg tttttttaaa tacaataaaa atttacatat ttatattttt atattgaaaa      2820
     aaaaaaaaaa aaaaaaaaaa aaaaa                                            2845
//