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EBI DbfetchID BC089713; SV 1; linear; mRNA; STD; VRT; 2462 BP. XX AC BC089713; XX DT 16-FEB-2005 (Rel. 82, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 5) XX DE Xenopus tropicalis MGC108319 protein, mRNA (cDNA clone MGC:108319 DE IMAGE:7022096), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-2462 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2462 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2462 RA Klein S., Gerhard D.S.; RT ; RL Submitted (01-FEB-2005) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998M0614747Q. DR ImaGenes; IRAKp961E13213Q. DR ImaGenes; IRBNp992G1128D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Rob Granger, University of Virginia CC cDNA Library Preparation: Open Biosystems CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 213 Row: e Column: 13 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 59808720. XX FH Key Location/Qualifiers FH FT source 1..2462 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Swb1N" FT /clone="MGC:108319 IMAGE:7022096" FT /tissue_type="Whole body, male, 10 months old, strain F6, FT normal" FT /note="Vector: pExpress1" FT /db_xref="taxon:8364" FT gene 1..2462 FT /gene="MGC108319" FT CDS 45..1751 FT /codon_start=1 FT /gene="MGC108319" FT /product="MGC108319 protein" FT /db_xref="GOA:Q5EBF1" FT /db_xref="InterPro:IPR016695" FT /db_xref="UniProtKB/Swiss-Prot:Q5EBF1" FT /protein_id="AAH89713.1" FT /translation="MTTSWSDRLQNAADLPANMDGHALKKYRREAYHRVFVNRSLAMEK FT IKCFGFDMDYTLAVYKSPEYESLGFDLTVERLVSIGYPQELLNFVYDPTFPTRGLVFDS FT TYGNLLKVDAYGNILVCAHGFNFMRGPEIREQYPNKFIQRDDTDRFYILNTLFNLPETY FT LLACLVDFFTNCDRYTSCEMGFKDGDLFMSFRSMFQDVRDAVDWVHYKGSLKEKTVENL FT PKYVVKDPKLPLLLSRMNEVGKVFLVTNSDYKYTHKIMTYLFDLPHGPKPGSSHRLWQT FT YFDLILVDARKPLFFGEGTVLRQVDTNTGKLKIGTYTGPLQHGIVYSGGSSDIVCDLLG FT AKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFL FT AELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQVMRYA FT DLYAASFINLLYYPFSYLFRAAHVLMPHESTVEHTHVDIHETESPMATRNRCSLDFKDS FT DFKRHQLTRSISEIKPPNLFPQKPQEITHCHDEDDDEEEEEEEEEEEEEEE" XX SQ Sequence 2462 BP; 689 A; 565 C; 551 G; 657 T; 0 other; ctcctgtcag aagcggaagg tggattcaag caccacgttt aaaaatgaca acttcttgga 60 gtgatcgcct ccaaaatgct gctgacctcc cagccaatat ggatggacat gccttaaaga 120 agtatcgacg tgaagcttac cacagggtct ttgtgaacag aagtcttgcc atggaaaaga 180 tcaagtgctt tggatttgat atggattata cactcgctgt gtacaagtct ccagagtacg 240 aatcccttgg ctttgatctt actgttgaaa gacttgtatc cattggttac cctcaagagc 300 ttctaaattt tgtctatgat cccacatttc ctacaagggg cctggtcttt gattcgacct 360 atgggaatct attaaaggtt gatgcctacg gtaatatcct tgtttgtgca catggcttta 420 acttcatgag agggccagaa ataagggagc aatacccaaa taaattcatc cagagagatg 480 acacagacag attctacatc ctcaacacac tctttaattt gccagaaact taccttctgg 540 cttgcctggt agatttcttt acaaattgtg acaggtacac aagctgtgaa atggggttta 600 aagatggaga cctctttatg tcctttcgga gtatgttcca ggatgtcaga gatgctgttg 660 actgggtcca ttataaggga tccctcaagg aaaagacagt agagaatttg ccaaagtatg 720 ttgttaaaga tcccaagttg ccgttactgc tgagccgcat gaatgaggtt gggaaagtgt 780 tcctggtcac taacagtgac tataaatata cccacaaaat tatgacttat ttgtttgact 840 tgcctcatgg accaaagcct ggcagctctc acagactttg gcagacctat tttgacctca 900 tattagttga tgctcgcaag cccttgtttt ttggagaagg aacagtgttg cgacaagtgg 960 atacgaatac tggcaaactg aaaattggaa cctacactgg tcctttacaa catggaattg 1020 tatattcagg aggttcctca gatatagtgt gcgacctgct gggtgctaaa ggaaaagata 1080 tcctgtatat cggcgatcac atctttggag atattcttaa atctaagaag cggcaaggat 1140 ggagaacatt cctggtcatt cccgagctgg cacaagaact tcacgtctgg actgacaaaa 1200 gctccctttt tgaagagctc cagagcctgg acatattctt agctgagcta tacaagcact 1260 tggacagtag cagcaatgaa cggcctgata tcagctccat ccagaggcgc attaagaaag 1320 tcacacatga catggacatg tgttacggga tgatgggcag cctgttccgc agtgggtccc 1380 gacagactct ctttgcaagt caggtgatgc gttatgctga tctctatgcc gcatctttca 1440 tcaatctcct gtattaccca ttcagctacc tcttcagagc agcacatgta ctgatgcccc 1500 atgaatccac cgtggaacat actcacgtgg acattcacga aacagagtcg ccaatggcca 1560 ctcggaatag gtgctctctg gatttcaagg attctgactt caagcggcac cagctgaccc 1620 gctccatcag tgagattaaa ccacccaacc tcttcccgca gaaaccccag gaaataacac 1680 actgccacga tgaagacgat gatgaagagg aggaggaaga agaagaagaa gaggaggaag 1740 aagaagaata aagggttgag caatagcgta tccccacagg atattgcttg ctgcagtgca 1800 gatacagcag gagtgtaact gactgggtaa ccgctcgcct gtttctccca agttcacaaa 1860 ctcgtctcct gcagttctgt tttctattcc cgtccaactg ctgagacatt tgcacgttgt 1920 tcctattccc tgtgcatttc tgtgcaagtg cactcgtgtc tcggttgctc tctattctga 1980 gagtcacagc acagtattcc ctttccattc ttctctttct cttctggaac cgactcggat 2040 ttctatcaac ccaaaggggt ggttccgatt acagcttagc aacagccatc atcttacatt 2100 cttagggcca aacttagaaa gggagccccc tggcaaagca gggatgcctc tgagcgatgc 2160 ccaacctgtg acccaagctg ccattggact accattccca gcagccagtg gggcgaagca 2220 gggtggacac cgctcataca tgtactgagc atgtactctt agcaacattt cttcccattc 2280 tcttttctgc caatcctgta cttgctgttt ttcaggagaa tcgactattg cagggttgtc 2340 atggcctgtt aaattctgag agttcagctt cgcttgggga tgtgcatgaa aattgcacag 2400 atagggatgt gtttaaaggc aaacaatcat atattaaaaa aaaaaaaaaa aaaaaaaaaa 2460 aa 2462 // |
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