EBI Dbfetch

ID   BC089235; SV 1; linear; mRNA; STD; VRT; 1415 BP.
XX
AC   BC089235;
XX
DT   05-FEB-2005 (Rel. 82, Created)
DT   19-MAR-2009 (Rel. 100, Last updated, Version 4)
XX
DE   Xenopus tropicalis betaine--homocysteine S-methyltransferase 1, mRNA (cDNA
DE   clone IMAGE:7000203), partial cds.
XX
KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1415
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1415
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1415
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (31-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998I0214691Q.
DR   ImaGenes; IRAKp961D18212Q.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Rob Granger, University of Virginia
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 212 Row: d Column: 18
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 58618890.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1415
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Swb1"
FT                   /clone="IMAGE:7000203"
FT                   /tissue_type="Whole body, male, 10 months old, strain F6,
FT                   normal"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:8364"
FT   gene            <1..1415
FT                   /gene="bhmt"
FT   CDS             <1..1206
FT                   /codon_start=1
FT                   /gene="bhmt"
FT                   /product="bhmt protein"
FT                   /db_xref="GOA:Q5M8Z0"
FT                   /db_xref="InterPro:IPR003726"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5M8Z0"
FT                   /protein_id="AAH89235.1"
FT                   /translation="PTGAKKGLLERLDAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAV
FT                   EHPEAVRQLHREFLRAGANVMQTFTFYASDDKLENRGNYVAKKISGQKVNEAACDIARE
FT                   VANEGDALVAGGVSQTPSYLSCKSEVEVKGIFRKQLDVFIKKNVDFLIAEYFEHVEEAV
FT                   WAVEVLKESGKPVAATLCIGPQGDLNGVTPGECAVRLAKAGASVVGVNCHFDPMTCIAT
FT                   VKLMKEGLVAAKVKAHLMTQPLAYHTPDCGKQGFIDLPEFPFALEPRIVTRWDIHKYAR
FT                   EAYNLGVRYIGGCCGFEPYHTRAIAEELAPERGFLPPGSEKHGSWGSGLEMHTKPWVRA
FT                   RARRDYWEKLPPASGRPCCPSMSKPDAWGVTKGDADLMQQKEATTEQQLIDLFAKQCIK
FT                   SN"
XX
SQ   Sequence 1415 BP; 420 A; 297 C; 377 G; 321 T; 0 other;
     ccgactggag caaagaaagg ccttctagag cgcctagatg ccggtgaggt tgtcatcgga        60
     gacggcggat ttgtgtttgc tttagaaaaa cgaggctatg tcaaggccgg accttggacg       120
     ccagaagctg cagtggaaca cccagaagca gtacggcagc ttcaccgaga attcctgcga       180
     gctggagcca atgtcatgca gacatttacc ttctatgcta gtgatgacaa gctggagaac       240
     agaggcaact atgtggctaa gaaaatctct ggccagaaag taaatgaagc tgcctgtgac       300
     atagcccgag aagtggccaa cgagggtgat gcattagtag caggaggggt gagccagaca       360
     ccatcgtacc tcagctgcaa aagtgaagtc gaggtgaaag gcatcttcag gaagcaactg       420
     gatgtcttca ttaagaaaaa cgtggatttc ctcatagctg agtattttga acatgttgaa       480
     gaagctgttt gggccgttga ggtactgaaa gagtctggaa aaccagttgc tgctacgctc       540
     tgcattggtc ctcagggaga tttgaatgga gttacacctg gagagtgtgc tgtgaggttg       600
     gccaaagctg gtgcctctgt ggtgggagtc aactgccatt ttgacccaat gacctgtatt       660
     gccacagtga agcttatgaa ggaaggcctg gtagctgcta aggtgaaggc ccatttaatg       720
     acccagccat tagcttatca cacaccagac tgcggaaagc aaggttttat tgacctgcct       780
     gagtttccat ttgctttgga accaagaatt gtcaccaggt gggacataca caagtacgct       840
     cgggaggctt ataacctcgg agtgcgctac attggaggct gctgtggctt tgagccctac       900
     cacaccagag caatagccga agagctggcc ccagagagag gtttcctacc gccaggttct       960
     gagaagcatg gaagctgggg aagcggctta gaaatgcata caaaaccctg ggttagagca      1020
     agggctaggc gggactactg ggagaagcta cctccagcct cgggtaggcc ttgctgtcct      1080
     tctatgtcca agccagatgc atggggcgtg accaaaggag atgctgatct gatgcagcag      1140
     aaagaggcaa caacagaaca acaactgatc gatctatttg caaagcaatg catcaaatcc      1200
     aattagactt cagtcattct aaagggttcc catgccttta tactgtatgc ataccatatg      1260
     tatatacatg gcatgcatta aaaagtacca atggcagaga tttctatatt cttgcagata      1320
     atgagacctc tttacaattc ctggatatat ggagcaagtg agaaataaat gtcacttttg      1380
     taaaacaaaa aaaaaaaaaa aaaaaaaaaa aaagg                                 1415
//