 |
|
EBI DbfetchID BC088570; SV 1; linear; mRNA; STD; VRT; 1733 BP. XX AC BC088570; XX DT 04-JAN-2005 (Rel. 82, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 4) XX DE Xenopus tropicalis hypothetical LOC496948, mRNA (cDNA clone MGC:97766 DE IMAGE:6988943), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-1733 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-1733 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-1733 RA Klein S., Gerhard D.S.; RT ; RL Submitted (20-DEC-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998C2214662Q. DR ImaGenes; IRAKp961K22204Q. DR ImaGenes; IRBNp992B0724D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Robert M. Grainger CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 204 Row: k Column: 22 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 58332765. XX FH Key Location/Qualifiers FH FT source 1..1733 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb5" FT /clone="MGC:97766 IMAGE:6988943" FT /tissue_type="Embryo, Silurana tropicalis, gastrula (stages FT 10-13)" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:8364" FT gene 1..1733 FT /gene="LOC496948" FT CDS 34..1554 FT /codon_start=1 FT /gene="LOC496948" FT /product="hypothetical LOC496948" FT /db_xref="GOA:Q5I096" FT /db_xref="InterPro:IPR004856" FT /db_xref="UniProtKB/TrEMBL:Q5I096" FT /protein_id="AAH88570.1" FT /translation="METCSLAALAVLLALYVRWTVSLGPYSGAHKPPMFGDYEAQRHWQ FT EITFSLPVKQWYFNSTDNNLQYWGLDYPPLTAYHSFLCGQIAHLLNPDWVALNASRGYE FT SLQHKLFMRATVLVADLIIYIPAVIVYCFCMREIPSKKKISSLCCILLYPGLILIDYGH FT FQYNSVSLGFALWGVIALSFEWHLLGSFVFCFALNYKQMELYHSLPFFCYLLGRCLKGG FT ITGRGLFLLFKIGVTVIASFALCWIPFLTETEQILQVLRRLFPVGRGLFEDKVANIWCS FT LSAIFKVKKMLSSESQLYLSFLCTLLSVLPSCIKLTMQPSVRRFKFALVNCALSFFLYS FT FQVHEKSILLVSLPVSLIINDAPLISTWFLLVSTFSMLPLLLKDGLLMAYIITTLVFLL FT VSKSLLPAPENMSEESINLKPFCISVRRYLPWFRLPGYLIKLSFCTSLMGMAALTLASA FT VLVPPPRLPDLFPVLVSSFSCVHFLAFLFYFNIIYFWDNFNDKSKKKL" XX SQ Sequence 1733 BP; 463 A; 334 C; 321 G; 615 T; 0 other; ggaagtagtg tgctgagaga gtgttttaga gccatggaga cttgttcgct agcagcttta 60 gctgtgcttt tggcgcttta tgtgcgctgg acagtgtcac tcggtcctta ctcaggagcc 120 cataagccac caatgtttgg agattatgaa gcccagaggc actggcagga aataacattc 180 agtttaccag ttaaacagtg gtattttaat tctacagaca acaatcttca gtactggggc 240 cttgattacc cacctctgac tgcataccac agttttcttt gtgggcaaat tgctcatcta 300 ctaaatccag actgggtggc cctgaacgca tcccgaggtt acgaatctct ccaacacaag 360 ctgtttatgc gggctactgt tttagtagct gacttgatca tttacatccc tgctgtaatt 420 gtctactgtt tttgtatgag agaaatacct tcaaaaaaaa aaatttcctc cttatgctgt 480 attttgcttt acccgggctt gatccttata gactacggac attttcaata caactctgtg 540 agccttggat ttgcactatg gggagtcatt gcgctttcat ttgaatggca cctgctggga 600 tcatttgtat tttgctttgc actaaactac aaacaaatgg aactttacca ttctctgcca 660 tttttctgct atctgttagg aagatgttta aaaggaggca ttacaggcag gggcttattc 720 ttgttattta agattggcgt taccgtaatt gcttcctttg ctctttgctg gattcctttc 780 ttgacagaaa ctgaacaaat acttcaagtc cttagaagac ttttccctgt tggccgtgga 840 ctctttgagg acaaagtagc caacatttgg tgcagtttaa gtgcaatatt taaagtaaag 900 aaaatgttat cttcggaatc tcagttatat ttaagctttc tttgtacact gttaagtgta 960 ttgccttcat gcattaaact gacaatgcag ccttctgttc gtagatttaa atttgctctg 1020 gttaactgtg cactttcatt cttcttatat tcctttcaag ttcatgaaaa atcaatactt 1080 ttagtgtcat tgccagtcag cttaattata aatgatgctc cgttgatctc tacatggttt 1140 ttattggtat caacatttag catgcttccc cttttgctga aggatggatt gttaatggct 1200 tatatcatca ctacgttagt gttccttcta gtaagcaagt ctttgctgcc agcgcctgaa 1260 aatatgtcag aagagtctat aaatctgaaa ccattctgca tttctgtaag gagatatctt 1320 ccttggttca ggcttccagg atatctgatt aaactatcat tctgcacatc actgatgggg 1380 atggctgctc tgaccctggc aagtgctgtc ctggttccac caccaaggct tcctgacctt 1440 tttcctgtac ttgtctccag cttctcctgt gttcattttt tagcattttt attttatttt 1500 aacattattt atttttggga taatttcaat gacaaaagta agaaaaaact gtgagtccaa 1560 aatgtgtttt atattccatt tttagtttta tgtatatatt gctagcattt ggacacagat 1620 tatttttctt ttttaattac tgaaacatgc ttgtttaatt ttggcctttt gagtcaggtc 1680 aataaagtat ttttactcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa 1733 // |
|