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EBI DbfetchID BC088475; SV 1; linear; mRNA; STD; ROD; 1329 BP. XX AC BC088475; XX DT 24-DEC-2004 (Rel. 82, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 8) XX DE Rattus norvegicus asparagine-linked glycosylation 3, alpha-1,3- DE mannosyltransferase homolog (S. cerevisiae), mRNA (cDNA clone MGC:95144 DE IMAGE:7129249), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-1329 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1329 RG NIH MGC Project RA ; RT ; RL Submitted (20-DEC-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000003092. DR Ensembl-Gn; ENSRNOG00000001712; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000002331; Rattus_norvegicus. DR ImaGenes; IMAGp998I2315026Q. DR ImaGenes; IRAKp961F19184Q. DR ImaGenes; IRBPp993G1122D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 184 Row: f Column: 19 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 58865363. XX FH Key Location/Qualifiers FH FT source 1..1329 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_236" FT /clone="MGC:95144 IMAGE:7129249" FT /tissue_type="Kidney, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..1329 FT /gene="Alg3" FT CDS 70..1218 FT /codon_start=1 FT /gene="Alg3" FT /product="asparagine-linked glycosylation 3, FT alpha-1,3-mannosyltransferase homolog (S. cerevisiae)" FT /db_xref="GOA:Q5M7T0" FT /db_xref="InterPro:IPR007873" FT /db_xref="UniProtKB/TrEMBL:Q5M7T0" FT /protein_id="AAH88475.1" FT /translation="MATAGLARTLSTAAGASLHLDGGLLPLPSRGGHHLLGHSQGGIYP FT AGFLYIFTGLYYATDRGTDIPTAQNIFAVLYLVTLVLVFLIYHQTSKVPPFVFFFMCCA FT SYRVHSIFVLRLFNDPVAMALLFLSVNLFLAQRWSWGCCCFSLAVSVKMNVLLFAPGLL FT FLLLTQFGFRGALPKLALCAALQVVLGLPFLLENPVGYLSRSFDLGRQFLYQWTVNWRL FT LPEAIFLHRAFHLALLAAHLSFLLLFALCRWHRTGESILSLLKDPSKRKVPPQPLTPNQ FT IVSVLFTSNFIGVCFSRSLHSQFYVWYFHTLPHLLWATPARWLTHLLRLLVLGLIELSW FT NTYPSTPFSSAALHLCHAVTLLQLWLSPQFFPRSVQPSRKTH" XX SQ Sequence 1329 BP; 235 A; 435 C; 305 G; 354 T; 0 other; gatggctgct gggctgcgga aacgcggcct gccgggttct gtcgtccagc cggcaggaat 60 ctggaaacaa tggctacagc gggcctggca agaacgctat ctactgctgc gggagcctcg 120 ctacaccttg atggtggcct cctgcctctg cctagcagag gtgggcatca ccttctgggt 180 cattcacagg gtggcatcta cccagctggt tttctgtaca tctttacggg gctttactat 240 gctacggacc ggggcactga catccctacg gcccagaaca tctttgctgt actctacctt 300 gtcaccttgg tgcttgtttt cttgatatac caccagacct ccaaggtgcc tcccttcgtc 360 tttttcttca tgtgctgtgc ctcttaccgt gtccactcca tctttgtgct gcggctcttc 420 aacgacccgg tagctatggc attgctcttc ctcagcgtca acctcttcct ggcgcagcgc 480 tggagctggg gctgctgctg tttcagcctg gccgtctcgg tgaagatgaa cgtgctcctt 540 ttcgccccag gattgctatt ccttcttctt actcagttcg gcttccgtgg cgccctcccc 600 aagctggccc tctgcgctgc tcttcaggtg gtgctgggat tgcccttcct gttagagaac 660 cccgttggct acctgtcgcg ctcctttgac cttggccgtc agtttcttta ccaatggaca 720 gtgaattggc gtctcctgcc tgaagccatc ttcctgcacc gtgccttcca tctggccctg 780 ctggctgccc atcttagctt cctcttgcta tttgccctct gtaggtggca cagaacaggg 840 gaaagtattc tgtcgctgct gaaggatcct tccaaaagga aagttccacc ccaacccctc 900 acacctaatc agattgtctc cgtcctcttc acctccaact tcattggcgt ctgcttcagc 960 cgctccctcc actcccagtt ttatgtctgg tacttccaca cgctgcccca cctcctgtgg 1020 gccacgcccg cacgctggct cacacacctg ctcaggttgc tggtgctggg actcatcgag 1080 ctctcctgga atacataccc atccacaccc ttcagctctg ctgccctaca cctgtgccac 1140 gctgtcaccc tgctgcagct ctggctgtcc cctcagttct ttcctaggag cgtccagcca 1200 agcaggaaaa cccactgaaa tccacccctt ccttctagga cttgctcagc accgtgggtg 1260 gaatggactc tgctcttaga ataaaccttg caagtccagc tgtgaaaaaa aaaaaaaaaa 1320 aaaaaaaaa 1329 // |
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