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EBI DbfetchID BC088403; SV 1; linear; mRNA; STD; ROD; 3316 BP. XX AC BC088403; XX DT 24-DEC-2004 (Rel. 82, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 9) XX DE Rattus norvegicus prolyl-tRNA synthetase 2, mitochondrial (putative), mRNA DE (cDNA clone MGC:93730 IMAGE:7107369), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-3316 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3316 RG NIH MGC Project RA ; RT ; RL Submitted (20-DEC-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000001135. DR Ensembl-Gn; ENSRNOG00000007327; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000057471; Rattus_norvegicus. DR ImaGenes; IMAGp998J0714969Q. DR ImaGenes; IRAKp961G10181Q. DR ImaGenes; IRBPp993E0720D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 181 Row: g Column: 10 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62078860. XX FH Key Location/Qualifiers FH FT source 1..3316 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_235" FT /clone="MGC:93730 IMAGE:7107369" FT /tissue_type="Kidney, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..3316 FT /gene="Pars2" FT /gene_synonym="RGD1305345" FT CDS 220..1647 FT /codon_start=1 FT /gene="Pars2" FT /gene_synonym="RGD1305345" FT /product="prolyl-tRNA synthetase 2, mitochondrial FT (putative)" FT /db_xref="GOA:Q5M7W7" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002316" FT /db_xref="InterPro:IPR004154" FT /db_xref="InterPro:IPR006195" FT /db_xref="UniProtKB/Swiss-Prot:Q5M7W7" FT /protein_id="AAH88403.1" FT /translation="MEGLLTRCRTLSALATCSLRHSRCIVRKCYHCAPGRGQRLVVSRM FT FQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRV FT IDQEMQAIGGQKINMPSLSPAELWRATGRWDLMGRELLRLKDRHGKEYCLGPTHEEAVT FT ALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQET FT YSLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHFSAN FT TEIVDLSQKICPDCQGPLTETKGIEVGHTFYLGTKYSSIFNAHFTNAHGESLLAEMGCY FT GLGVTRILAAAIEVLSTEDCIRWPSLLAPYQVCIIPPKKGSKEAAATEIVERLYDDVTE FT ALPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIASKRALEDPAHFEVWSQNTGEVV FT FLTKEGVMELLTGVHVV" XX SQ Sequence 3316 BP; 805 A; 860 C; 874 G; 777 T; 0 other; ggcttcgcgt gactgaagag gccggcgctg gtatagagtg ctgctggtgc tggagtgctg 60 ggattaaagg catatgtcac tatacccgga tgaatttctt taagtgtgat atcttgagct 120 aatagacatg gaaggatcca catcttggag cccaggctga gaacccagct ataaccatca 180 tacccacgtg actcattttt ctccatgtac cagggtatca tggaaggttt gctgacaaga 240 tgcagaacac tgtctgcctt ggctacctgc agcctccgtc actccaggtg cattgtccgc 300 aagtgttacc actgtgcacc agggagaggg cagcgcttgg tagtatcccg catgttccag 360 cctcagaacc tccgggaaga ccaggtgctt tctctggagg gcagagctag tgacctgacc 420 tgtaagagtc agcggctgat gctgcaagtg ggcctgatcc ttccagcgag ccctggctgt 480 taccacctca tgccctatac agttcgtgcc gtggagaagc ttgtgcgggt gatagaccag 540 gagatgcagg ccatcggtgg gcagaaaatc aacatgccca gcctcagccc agctgagctg 600 tggcgggcca ccggccgctg ggacctgatg ggcagggagc tgctgagact gaaagacagg 660 cacggcaaag agtactgctt gggacccact catgaggaag cagttacagc cctggttgcc 720 tcccagaaga aactgtccta caagcagctt cccttactgc tgtaccaagt tacaaggaag 780 tttcgggatg agcctcggcc ccgttttggt ctcctccgtg gccgagagtt ctatatgaag 840 gacatgtaca cctttgactc ctcctctgag gctgcccagg agacctatag cctggtgtgt 900 gatgcttatt gtaggctttt cgacaggctg gggttgcgat ggatgaaggc cagggcagat 960 gtgggcagca ttgggggcac aatgtcccat gaattccagc tgccagtgga cattggagag 1020 gaccggcttg tggtctgtcc cagctgccac ttctcagcca acacagagat agtagacttg 1080 tcacaaaaaa tctgccctga ctgccagggt cccctgacag aaaccaaagg catcgaggtg 1140 gggcacacat tctacctcgg taccaagtac tcttccattt tcaatgccca ctttaccaat 1200 gcccacgggg aatctttgct ggctgaaatg gggtgctacg gcctgggagt cactcggatc 1260 ctggctgctg ccatcgaagt tctctctaca gaagactgca tccgctggcc cagcctcctg 1320 gctccttacc aagtctgcat cataccccct aagaagggta gcaaggaggc agcagccaca 1380 gagattgtgg agcgattata tgatgacgtc acagaggctc tgcctcagct ccgaggggag 1440 gttctgctgg atgacaggac ccacctgacc attggaaaca gactaaaaga tgccaacaag 1500 ctcggctacc cctttgtgat cattgcaagc aagagggccc tggaggaccc tgcgcacttt 1560 gaggtttggt cccagaacac tggtgaggtg gtcttcctca ccaaagaggg agtcatggaa 1620 ctgctgactg gcgtgcatgt tgtctaagtg cccaaccaca cctgccccca gacttggtgt 1680 ccactgtaac actgtagttc cctccacttc cctcccggct ggtttctcca gaaatggctt 1740 ctcatggatg gtgagagtat gttaggaaaa ccactccttg cttgtgatgg ttcatagtta 1800 gtcattaact cggccctccc agggctggtt gtgctaccat atgccatatc ttttacaaat 1860 agacacttct gttaggagga ctgaaaggtg acaaagagac ccaggtcact ttccctccag 1920 ctgagtttct gggtgtaaga caagaatggt tgaaagctgg ggagatgctt ccccaacccc 1980 aacccacagt ctgagcacac gccttgcatt tcattcattc cagagagcag ggctagctgc 2040 ccttctcccc tgagaagccc cgagctgcag agccgagctg cagagagtca agaacctggt 2100 tgctgctaat tcactggtga tttgacaccc ccacacgccc actggagcct gggattccca 2160 tctgaacatg gtgatggagt taagtcaata aggtcctagg gctctcactg agcagctcca 2220 caagacacat gggtctggtt gctcatgcct ctatgcttcc ccagaagcca gatggcccaa 2280 agctacctcc agatacttga ccgtactggg tcacttcagc actgagatca tgttctgctg 2340 attgaataaa gtcaagcctt tggggtgaac tttgtgtgcg tgttaacttg aaccaaagat 2400 aacaccagtt tcagtagtac acacagtaga ctgctctccc cgtctgcctc actggggagg 2460 ggcagggact gggaaatcct ttaaacagtt tctcccagac ttcaggagca gcacactcca 2520 gccccacagt gaccttgttg tgggttcaga attgaattcc cgtcgctaca agagcgactg 2580 gttgagagct gactagattc tgtgggaaac ggagtcatga ctggattcca tagcattgct 2640 ccagcatcta gatgaggaag atccctcgtc catggaacag tgagtcttgc caccttggtt 2700 gacactctag atgggctctg agacacctcc agaggtgagc ctcataaatc tagtcgaccc 2760 taaattcaaa aacttgccaa tgaaggtaaa tcctcataaa aaggtctctg ggctccaaag 2820 ctggtcctgg gatccttcag ggcttggcag atatatgcac tgggaacctt atggtttgtg 2880 tgtaagggta gagttactgt agaatcacag cagctggaca gacttagagg agaaagcggg 2940 ctaagcacct gtattcccct tcatgcttct gccagatgtc aagtgaacag ccacctccag 3000 ccacatgctc ctgcaaccga gtgcaagtcg gggtgactga actgaaaccc aaatactgct 3060 tctttgggtc gtttctttgg ggtattttgg tctcagtgac atgagatgtg atctgccttt 3120 gcaatacatg gagttctgag agcaagctcg ggacaggctg catgacagag gctcttagtt 3180 tactgcagtt gggatccctg agtcccttac agagttggtt ccagtggggc tgttgccttg 3240 aaccacacaa attaaagcct ccagaagatt ctggctgcag tcagaaccaa gaaaaaaaaa 3300 aaaaaaaaaa aaaaaa 3316 // |
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