EBI Dbfetch

ID   BC087774; SV 1; linear; mRNA; STD; VRT; 1429 BP.
XX
AC   BC087774;
XX
DT   16-DEC-2004 (Rel. 82, Created)
DT   19-MAR-2009 (Rel. 100, Last updated, Version 8)
XX
DE   Xenopus tropicalis betaine--homocysteine S-methyltransferase 1, mRNA (cDNA
DE   clone MGC:108209 IMAGE:7016444), complete cds.
XX
KW   MGC.
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1429
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1429
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1429
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (10-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998A1814733Q.
DR   ImaGenes; IRAKp961M21212Q.
DR   ImaGenes; IRBNp992D0327D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Rob Granger, University of Virginia
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 212 Row: m Column: 21
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 56611138.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1429
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Swb1"
FT                   /clone="MGC:108209 IMAGE:7016444"
FT                   /tissue_type="Whole body, male, 10 months old, strain F6,
FT                   normal"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:8364"
FT   gene            1..1429
FT                   /gene="bhmt"
FT   CDS             11..1222
FT                   /codon_start=1
FT                   /gene="bhmt"
FT                   /product="betaine--homocysteine S-methyltransferase 1"
FT                   /db_xref="GOA:Q5M8Z0"
FT                   /db_xref="HSSP:1LT7"
FT                   /db_xref="InterPro:IPR003726"
FT                   /db_xref="InterPro:IPR017226"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5M8Z0"
FT                   /protein_id="AAH87774.1"
FT                   /translation="MAPTGAKKGLLERLDAGEVVIGDGGFVFALEKRGYVKAGPWTPEA
FT                   AVEHPEAVRQLHREFLRAGANVMQTFTFYASDDKLENRGNYVAKKISGQKVNEAACDIA
FT                   REVANEGDALVAGGVSQTPSYLSCKSEVEVKGIFRKQLDVFIKKNVDFLIAEYFEHVEE
FT                   AVWAVEVLKESGKPVAATLCIGPQGDLNGVTPGECAVRLAKAGASVVGVNCHFDPMTCI
FT                   ATVKLMKEGLVAAKVKAHLMTQPLAYHTPDCGKQGFIDLPEFPFALEPRIVTRWDIHKY
FT                   AREAYNLGVRYIGGCCGFEPYHTRAIAEELAPERGFLPPGSEKHGSWGSGLEMHTKPWV
FT                   RARARRDYWEKLPPASGRPCCPSMSKPDAWGVTKGDADLMQQKEATTEQQLIDLFAKQC
FT                   IKSN"
XX
SQ   Sequence 1429 BP; 422 A; 301 C; 382 G; 324 T; 0 other;
     cttcgcagag atggcaccga ctggagcaaa gaaaggcctt ctagagcgcc tagatgccgg        60
     tgaggttgtc atcggagacg gcggatttgt gtttgcttta gaaaaacgag gctatgtcaa       120
     ggccggacct tggacgccag aagctgcagt ggaacaccca gaagcagtac ggcagcttca       180
     ccgagaattc ctgcgagctg gagccaatgt catgcagaca tttaccttct atgctagtga       240
     tgacaagctg gagaacagag gcaactatgt ggctaagaaa atctctggcc agaaagtaaa       300
     tgaagctgcc tgtgacatag cccgagaagt ggccaacgag ggtgatgcat tagtagcagg       360
     aggggtgagc cagacaccat cgtacctcag ctgcaaaagt gaagtcgagg tgaaaggcat       420
     cttcaggaag caactggatg tcttcattaa gaaaaacgtg gatttcctca tagctgagta       480
     ttttgaacat gttgaagaag ctgtttgggc cgttgaggta ctgaaagagt ctggaaaacc       540
     agttgctgct acgctctgca ttggtcctca gggagatttg aatggagtta cacctggaga       600
     gtgtgctgtg aggttggcca aagctggtgc ctctgtggtg ggagtcaact gccattttga       660
     cccaatgacc tgtattgcca cagtgaagct tatgaaggaa ggcctggtag ctgctaaggt       720
     gaaggcccat ttaatgaccc agccattagc ttatcacaca ccagactgcg gaaagcaagg       780
     ttttattgac ctgcctgagt ttccatttgc tttggaacca agaattgtca ccaggtggga       840
     catacacaag tacgctcggg aggcttataa cctcggagtg cgctacattg gaggctgctg       900
     tggctttgag ccctaccaca ccagagcaat agccgaagag ctggccccag agagaggttt       960
     cctaccgcca ggttctgaga agcatggaag ctggggaagc ggcttagaaa tgcatacaaa      1020
     accctgggtt agagcaaggg ctaggcggga ctactgggag aagctacctc cagcctcggg      1080
     taggccttgc tgtccttcta tgtccaagcc agatgcatgg ggcgtgacca aaggagatgc      1140
     tgatctgatg cagcagaaag aggcaacaac agaacaacaa ctgatcgatc tatttgcaaa      1200
     gcaatgcatc aaatccaatt agacttcagt cattctaaag ggttcccatg cctttatact      1260
     gtatgcatac catatgtata tacatggcat gcattaaaaa gtaccaatgg cagagatttc      1320
     tatattcttg cagataatga gacctcttta caattcctgg atatatggag caagtgagaa      1380
     ataaatgtca cttttgtaaa acaaaaaaaa aaaaaaaaaa aaaaaaagg                  1429
//