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EBI DbfetchID BC086806; SV 1; linear; mRNA; STD; MUS; 2327 BP. XX AC BC086806; XX DT 10-DEC-2004 (Rel. 82, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 6) XX DE Mus musculus phosphatidylinositol glycan anchor biosynthesis, class H, mRNA DE (cDNA clone MGC:102258 IMAGE:30603877), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2327 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2327 RG NIH MGC Project RA ; RT ; RL Submitted (02-DEC-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000021120; Mus_musculus. DR Ensembl-Tr; ENSMUST00000072154; Mus_musculus. DR ImaGenes; IRAKp961N03195Q. DR ImaGenes; IRAVp968A05160D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 195 Row: n Column: 3 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 41872421. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2327 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_GZ0" FT /clone="MGC:102258 IMAGE:30603877" FT /tissue_type="Eye, mouse" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..2327 FT /gene="Pigh" FT CDS 3..569 FT /codon_start=1 FT /gene="Pigh" FT /product="phosphatidylinositol glycan anchor biosynthesis, FT class H" FT /db_xref="GOA:Q5M9N4" FT /db_xref="InterPro:IPR019328" FT /db_xref="MGI:99463" FT /db_xref="UniProtKB/Swiss-Prot:Q5M9N4" FT /protein_id="AAH86806.1" FT /translation="MEDEKSFSDICGGRLALRCRYYSPYCREFGLSSARLSLCSLTAVT FT CAVWLAAYGLFTLCENSMVLSATIFITILGLLGYLHFVKIDQETLLIIDSLGIQMTSSY FT ASGKESTTFIEMDKVKDIIINEAIYMQKVIYYLCILLKEPGKPHEISRVVPVFQSAKPR FT LDCLIEVYRSCQEVLAHQKATATSL" FT misc_difference 2305..2327 FT /gene="Pigh" FT /note="polyA tail: 23 bases do not align to the mouse FT genome." XX SQ Sequence 2327 BP; 674 A; 513 C; 538 G; 602 T; 0 other; ccatggagga cgagaagagc ttctccgata tctgcggcgg ccgcctagcc ctgcggtgcc 60 gctactactc accgtactgc cgcgagttcg gcctcagctc ggctcggctg tcgctgtgct 120 cgctcaccgc ggtcacctgc gcggtgtggc tggcggccta cgggctcttc accctgtgcg 180 agaatagcat ggtcctctct gccaccatct tcatcaccat cttaggcctg cttggttacc 240 tccattttgt gaagattgac caggagactc tactaatcat cgactcactt ggcatccaga 300 tgacttcatc ttatgcatcg ggcaaagaaa gtaccacctt catagagatg gacaaggtca 360 aggacattat cattaacgag gctatctaca tgcagaaggt catttactac ctctgcattt 420 tactgaagga gccggggaag ccacacgaga tctctcgagt agttcctgtc ttccagagtg 480 ccaagccccg gttggactgc ttgattgaag tatacagaag ctgccaggag gttctggcac 540 accagaaagc cacagcaaca agcttatgag gctcagcatt caaaggccag tattgtcttt 600 atggagagga ctcctagact gtagtggccg gtttattttc catactgtaa aaaccatcag 660 gacacagtcc tgggaatcag aatggatgag tagatctcag aaccacagag gaggggctgg 720 aacttgattc atgttcataa tgttccctgt ataatacagt tttttctata ctacgaatca 780 aggggagacc ttaaggattt tgacatgtca aaaggcggcc aggcatagtg gcacatgcct 840 ttagtcccag cactcaagag gcagaagcag gtgatctctt gagtttaagg ccattctgag 900 ctacatagta agtatcctcc acccaaaagt attgtccaaa aagaacactg aaaactttaa 960 gtaccttcat gtttgtgtta aaatctgtga agtattaaga ctggtaccag atttcacaag 1020 aaaaatgtaa tttccatctg tatagactct tgtctaaaag ttagggaaaa taagtcacat 1080 ttttatgtat gagttagcag gaataaaatg cctaaagggc tagcctctat ccacccagct 1140 cctaagatct gtgcaggatc atgactcctt catccacaat ttagctaggg atggtgtgga 1200 tgcttgtaat cccagctctc agaagctgtc aacaggagga ttgaaagttt gaggccagcc 1260 tgggcttcgt gatgagacac tgtctcaaac cccaagataa atatccacaa cacacagtta 1320 ttgtctggtt cactgacagt tttattgaca aacatacata gcatttcagc catgggtgtc 1380 aagcatgaga gtacctttct gttaatattt tctattgctc aaaagctgtt tggctaagag 1440 ggcttaggtg aagagtgaga gattaaatgt tggttcccag acatgagcct gtcacattaa 1500 aggatgagga agccagttga cagaagcctt tgtttcagag gtggttcctt agatgctaaa 1560 gatcaggaag gagaaaaggc gctggactgg gcagaactcg cctttaaccc cagcactgca 1620 gaggcagagg caggcggatc tctgagtttg aggccagcct ggtctacata gtgagttcca 1680 ggacagccag gtctgcatag tgaaacccta tctcaaaaag agagcaagag aaaggaaaaa 1740 aaaaagcagc agcacagcag cagtagctaa tcagaccttc aagtcttaca aacagttgca 1800 ttagctggaa ttctgtttac aaaacaaaaa caacctgaga gcagactaca tccttactgg 1860 ctttaaggcc cttgggatgt aaaccaagaa ctgcattctc tgcccttcac ctagccttga 1920 aggagctgtc caggggccta tagcaatgtg acttgaggta gacctgtctc ctctagaacc 1980 ccaaatctgg ggtgggagtt ggggttcaaa cagaaatggc tataaagctg cctggcttgc 2040 aagtcaagct ctttttaagg ggcagactct tgtgcctttt taaagtcagg cttgtcagtt 2100 caaaggatga gggattacag cagctgaggc attcagatta aactaatttt tggccttgca 2160 gtttcttgtg gtgtacaaca cacacattgt tgggttaaag gcttatttct tgatattcct 2220 cttatcccct agtctatgtt actgaaaaat aataaaactg ccttaaagct acacaataaa 2280 gcttattttt tatatgttgg aaaaaaaaaa aaaaaaaaaa aaaaaaa 2327 // |
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