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EBI DbfetchID BC086742; SV 1; linear; mRNA; STD; VRT; 3504 BP. XX AC BC086742; XX DT 04-DEC-2004 (Rel. 82, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Danio rerio dehydrogenase E1 and transketolase domain containing 1, mRNA DE (cDNA clone MGC:101818 IMAGE:7231847), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-3504 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3504 RG NIH MGC Project RA ; RT ; RL Submitted (02-DEC-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998H2115154Q. DR ImaGenes; IRAKp961O22197Q. DR ImaGenes; IRBOp991A0557D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: John Ngai, Nancy Freeman, NIDCD CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 197 Row: o Column: 22 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 56269723. XX FH Key Location/Qualifiers FH FT source 1..3504 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_14" FT /clone="MGC:101818 IMAGE:7231847" FT /tissue_type="Olfactory epithelium" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..3504 FT /gene="dhtkd1" FT /note="synonym: zgc:101818" FT CDS 95..2872 FT /codon_start=1 FT /gene="dhtkd1" FT /product="dehydrogenase E1 and transketolase domain FT containing 1" FT /db_xref="GOA:Q5PRA2" FT /db_xref="InterPro:IPR005475" FT /db_xref="UniProtKB/Swiss-Prot:Q5PRA2" FT /db_xref="ZFIN:ZDB-GENE-041212-44" FT /protein_id="AAH86742.1" FT /translation="MSARSMLIHLPRLLHRSFGARRSFLASLYHTQRGVYGFRPRDGPE FT RRAELTQISALNRDHGLARLVEAYRAHGHKVAKINPLLPQSPVLESVPEISLLNGAVRG FT VLNTTGLRHFGKAEATAEEVVAYLESTYCGGISVETSQLQTLEEREWFADRFEELKKEA FT FSPEERRMLAKLMLESQEFDHFLATKFATVKRYGGEGAESMMGFFYELFRSSVYSGVTD FT VVMGMPHRGRLNLLTGLLQFPPELMFRKMRGLSEFPEHSPSIGDVLSHLTSTVELDFGA FT GHPLHVTMLPNPSHLEAINPVTQGKTRGRQQVKQDGDYSTDPHSRPGDKVICLQVHGDA FT SFSGQGIVPETFTLSNLPHYRVGGSIHLIVNNQVGYTTPSERGRSSLYCSDVGKMVGCA FT IIHVNGDDAEEVLRATRLAVEYQRRFRKDVIVDLLCYRQWGHNELDEPFFTNPAMYKII FT RSRKSIPDSYADQLISEGLMTDEERSQIKTSYYATLNNQLTNMTLYSPPPTNLQGRWGD FT LVEPQNRVSCWDTGVAQPLLQFVGAKSVDIPEEIILHSHLRKTHVQARLQKLEEGTKLD FT WSTAEALAFGTLLCQGFNIRISGQDVGRGTFSQRHAMVVCQETNDMFIPLNHISSEQKG FT HLEVCNSALSEEAVLGFEYGMSIAQPRLLPIWEAQFGDFFNGAQIIFDTFLSGGEAKWL FT LQSGLVILLPHGYDGAGPEHSSCRIERFLQLCDSKEEGVDGDTVNMAVVNPTLPAQYFH FT LLRRQMIRNFRKPLIVASPKTLLRFSGAVSGLSDMGPGTSFKPIIGDSSVNPASVQRVL FT FCSGKHYYALLKHRETIPEAEKNTALVRVEELCPFPTEALQQELNKYTNAKEFIWSQEE FT PQNMGCWSFVSPRFEKQLACKLRLVSRPALPAPAVGIGTLHHQQHEAILTSSFS" XX SQ Sequence 3504 BP; 900 A; 809 C; 896 G; 899 T; 0 other; gctatcgttt attatggctg cgctctagga tgcgtggctc ttcggcgaaa cttgtcatcg 60 tcttttaacc aagtttacct tatttattta cgtcatgtcc gcgcgcagta tgcttataca 120 cctccctcgg cttttgcacc gctcctttgg tgccaggagg tcgtttttag cgagtttgta 180 ccacactcag cgtggtgtgt acggtttcag accgagagac ggtccagaaa gacgggcaga 240 gttaacgcag atctccgctc ttaaccgaga tcacggactg gcgagactgg tggaggccta 300 tcgagcacat ggacacaaag tagctaaaat taacccctta ctaccacaaa gtcccgtgct 360 ggagagtgta ccggagataa gcctgctgaa tggagctgtt cgtggagtcc tcaacactac 420 cgggttgcgg cactttggta aagctgaggc gactgcagaa gaggttgtgg cgtatctgga 480 aagcacatac tgtgggggaa tctcagtgga aacctctcag ctgcagacct tagaggaacg 540 agaatggttc gctgaccgat ttgaggagct caaaaaagag gcgttttctc cagaggaaag 600 gagaatgctg gctaaactga tgctcgagtc acaggaattt gaccactttt tagccaccaa 660 gtttgcaact gtgaagcggt atggaggcga gggagcagag agcatgatgg gatttttcta 720 cgagctgttt cgctcttcag tatacagtgg agtgacggat gtggtcatgg gaatgcctca 780 ccgcggacgc cttaatctgc tcaccggcct tcttcagttt cctcctgagc tcatgtttcg 840 taagatgagg ggtctcagtg agtttccgga gcactctccc tctatcggag acgtcttgtc 900 ccatttaacg tctacagtgg agcttgactt cggggcagga caccctctcc atgtcacaat 960 gctgcccaat ccttcccacc tggaggccat caaccctgtg acacagggga aaacacgagg 1020 ccgacagcag gtcaaacagg acggcgacta ctccactgac cctcattcac gaccgggaga 1080 caaagtcatc tgcctgcagg ttcatggcga tgcttcattt tcaggacaag gaatagtacc 1140 ggaaaccttc accttgtcaa atctccctca ttatagagtg ggtggaagca tccacctcat 1200 tgtaaacaat caagtgggct acaccactcc ctctgagagg ggaagatcat ctctctactg 1260 tagtgatgtt ggtaaaatgg tgggatgtgc aataatccat gtgaatggcg atgatgctga 1320 agaagtcctc agagcgaccc ggctggcggt ggagtaccag agacgcttca gaaaagacgt 1380 cattgttgat ctgctttgtt accggcagtg gggccacaat gagctggacg aacccttttt 1440 cacaaaccct gcaatgtata aaataatacg gtcaagaaaa agcatcccag attcctatgc 1500 tgaccagctg atctctgagg gtctgatgac agacgaggag cgcagtcaga tcaagaccag 1560 ctactacgct acgctcaaca accagctgac taacatgacc ctctacagcc ctccacccac 1620 aaacctgcag ggccgctggg gagacctggt ggagccccag aatagagtct cgtgctggga 1680 cactggcgtc gcacagcccc tgctgcagtt tgttggagcc aaatcagtgg acatacctga 1740 ggagatcatt ctgcacagtc acctgaggaa gacacacgtg caggcacgtc tgcagaaact 1800 agaagagggc acaaaattgg actggtccac cgcggaggct ctggcgtttg gcacattgct 1860 atgccaggga tttaatatcc gtatcagtgg tcaggatgtg ggtcggggaa cgttcagtca 1920 gcgccacgct atggttgtgt gtcaggagac caacgacatg ttcatcccac tcaatcacat 1980 cagctctgaa cagaagggcc acttggaggt gtgtaacagt gctctctctg aggaagcggt 2040 tctgggtttt gagtatggga tgagcattgc tcagcctcga ctgctgccca tctgggaggc 2100 tcagtttgga gatttcttca acggtgccca gattattttt gatactttcc tctctggagg 2160 tgaggctaaa tggctcctgc agagtggact ggtcatttta ctgccacacg ggtacgatgg 2220 ggccggtcct gagcattcat cttgccgaat cgagcgcttc ttacagctct gcgacagtaa 2280 agaggaaggt gtggacgggg acacggtcaa catggcggtg gtgaatccca cacttccagc 2340 tcaatacttc catcttttga ggaggcagat gatcagaaac ttccggaaac cgctgatcgt 2400 ggcctctccc aagactctgc tgcgcttttc tggggcagtg tcaggcttgt ctgatatggg 2460 accaggaacg tcctttaagc cgattattgg tgattcttct gtgaaccctg caagtgtgca 2520 gcgggttctg ttttgctcag gtaaacatta ctatgccctg ctgaaacaca gagagacgat 2580 acctgaggcg gaaaaaaaca cagcgctagt cagggtcgag gaactgtgtc ctttccccac 2640 agaagctctg caacaggaac taaataaata cacaaacgcc aaagagttca tctggagtca 2700 agaggagcca cagaacatgg gctgctggtc atttgtgtca ccgaggtttg aaaaacagtt 2760 agcctgcaag ttgcggttgg tcagcagacc cgcattaccc gctccggctg tgggcatcgg 2820 aacgcttcac catcagcagc atgaagccat cctgacttcg tctttctcct gagtctgcac 2880 aactgtaaac ttcaacaaat ggccgtctgc tattgcacgc cgtctacaaa cacagcctga 2940 cgtttactgt cagagcacta cacagcggca ggtttgactc ttattccctt gcttataagg 3000 gagcgtctgt taactgaacg tttattactg gcatcctgaa ggggtttgtt atcagtatat 3060 agtttttaag gtatcataat tgatattttg gatgcttttc tgtgggttca catgattagt 3120 gattgtatag agatgatatt tttaaaagag gaggctgttt gagtattgtg tggttaattt 3180 cttgaagcac tttttgaagt ttgatatatt tacaggagac tgtagggagg aaaataaata 3240 atagacatta ttaccgtagc attaaattga gtatttcaat gtgaactgat agtgggtcag 3300 gatcatgttc atgtgaactt aaacagattt ttattacatt tatcagatga atgtatttca 3360 atgtgaaaag tattacttgc aagaatttta gagctgaaca tgatgaaatc taattttgct 3420 cgcaaagttg ctgaatggtt tacatgtgtt ttttttaaca tgcccatcat aaacccatcc 3480 aaatctttaa aaaaaaaaaa aaaa 3504 // |
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