 |
|
EBI DbfetchID BC085560; SV 1; linear; mRNA; STD; VRT; 1076 BP. XX AC BC085560; XX DT 03-NOV-2004 (Rel. 81, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 6) XX DE Danio rerio zgc:103585, mRNA (cDNA clone MGC:103585 IMAGE:7245562), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1076 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1076 RG NIH MGC Project RA ; RT ; RL Submitted (01-NOV-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998D0815190Q. DR ImaGenes; IRAKp961G14192Q. DR ImaGenes; IRBOp991F0254D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Takuya Sakaguchi and Didier Stainier CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 192 Row: g Column: 14 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 55250882. XX FH Key Location/Qualifiers FH FT source 1..1076 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_8" FT /clone="MGC:103585 IMAGE:7245562" FT /tissue_type="Liver, AB, adult zebrafish" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1076 FT /gene="zgc:103585" FT CDS 74..937 FT /codon_start=1 FT /gene="zgc:103585" FT /product="zgc:103585" FT /db_xref="GOA:Q5U3F8" FT /db_xref="InterPro:IPR010329" FT /db_xref="InterPro:IPR011051" FT /db_xref="InterPro:IPR016700" FT /db_xref="UniProtKB/Swiss-Prot:Q5U3F8" FT /db_xref="ZFIN:ZDB-GENE-041114-89" FT /protein_id="AAH85560.1" FT /translation="MTNQSLHVNIDKWIAENETSFLPPVCNKLMFFYQLNIMYVGGPNV FT RKDYHIEEGEELFYQVRGDMVLKVIENGKHKDVHIREGEMFLLPARIPHSPQRQANTVG FT LVIERRRLSKETDGLRYFVANSTEVLFERWFYCENLGTQLVPIIKEFMDSKENETGKPD FT PANPIKPAPYPLNTMNVMTPFSFREWVEKQKPVLASGCPVDMFGEQFETETLLFGSGTS FT ANKRRTDGWIWQLEGLSNVFMNGKEYSLTAGDCLLIFGETEYKWQRSQDCVALYVAQDP FT DRKRPY" XX SQ Sequence 1076 BP; 339 A; 191 C; 265 G; 281 T; 0 other; attgctcaga aatttgttgc ttactcagac agagtattcc acgcgaagct gtgtttagaa 60 gattgtgata aaaatgacca accagtctct gcatgtcaat attgacaagt ggattgctga 120 gaatgagact tcattcctac cgcctgtatg caacaaatta atgttttttt atcagttgaa 180 tattatgtat gttggtggtc caaatgtgag gaaagattat cacattgagg aaggagaaga 240 gcttttttac caggtgaggg gtgacatggt tttgaaagtg atagagaatg gcaaacataa 300 agatgtgcat attcgggaag gtgagatgtt cctgcttccg gcacgaattc cccattctcc 360 tcagagacag gcaaatactg tggggctggt gatagagcgg aggaggcttt ccaaagaaac 420 agatggcctt agatactttg tggcgaatag tacggaagtc ttgtttgagc gctggttcta 480 ctgtgaaaat cttggaaccc aacttgttcc catcataaaa gagtttatgg attccaaaga 540 gaatgaaaca ggaaaacctg atccagcgaa tcccataaag ccagccccat acccgctcaa 600 cacaatgaat gtgatgacac cattcagctt cagagagtgg gtggaaaagc agaagcctgt 660 ccttgccagc ggttgtccag tggatatgtt cggagaacag tttgagactg agacactgct 720 gtttggatct ggaacatctg caaataaaag acgaactgac ggctggatct ggcagctgga 780 agggctgtcc aacgtcttca tgaatggtaa agagtacagc ttgactgctg gggattgtct 840 tcttattttt ggagagacag agtataaatg gcaacggtca caggattgtg ttgctttgta 900 tgttgctcaa gacccagaca ggaagagacc ctactgagac acctaaatgg acaaggatat 960 ttgtttagga cccacaataa tcatcatatt cacacattgt tagacaaatt aacatgctga 1020 gtgacaattc ttgggtgaaa taaaacaggg gtaattggaa aaaaaaaaaa aaaaaa 1076 // |
|